Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0326
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 31 1.1
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 30 1.5
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 30 1.9
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4) 29 3.4
SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42) 29 3.4
SB_21164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 4.5
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 29 4.5
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 29 4.5
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 29 4.5
SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4) 28 5.9
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 28 5.9
SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06) 28 7.8
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 311 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 490
+++ +LP K + LP S + PT P+ T PS + T TATLPS K
Sbjct: 240 QTTTTLPSTKQPTTTQQTTTTLP--STKQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTK 297
Query: 491 EGALPSTCSQSTD--PSPS 541
+ P+T Q+T P+PS
Sbjct: 298 Q---PTTTQQTTATLPTPS 313
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +2
Query: 386 SARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDPSPS 541
S R PT + T LPS + T T T+PS K+ P+T Q+T PS
Sbjct: 199 STRQPTTNQQTTTTLPSTKQPTTTQQTTTTIPSTKQ---PTTTQQTTTTLPS 247
Score = 31.5 bits (68), Expect = 0.63
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 311 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 490
+++ +LP K + +P S + PT + T LPS + T T TLPS K
Sbjct: 208 QTTTTLPSTKQPTTTQQTTTTIP--STKQPTTTQQTTTTLPSTKQPTTTQQTTTTLPSTK 265
Query: 491 EGALPSTCSQSTDPS 535
+ P + +T PS
Sbjct: 266 QPTTPQ-LTTTTFPS 279
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +2
Query: 353 PGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDP 532
P K+ + + PT + T LPS R T TLPS K+ P+T Q+T
Sbjct: 173 PSTKQPSTALTTTKQPTTQQTTT-NLPSTRQPTTNQQTTTTLPSTKQ---PTTTQQTTTT 228
Query: 533 SPS 541
PS
Sbjct: 229 IPS 231
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 326 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 505
+PR +P P +NP PR + ++P +PR P PS S + PS +G+ P
Sbjct: 52 IPRVTKNPFPRVTKNPFPRVT-KNP-IPRVTKEPHPSCDQRSHPSCDQGSHPSCDQGSHP 109
Query: 506 STCSQSTDPS 535
S C Q PS
Sbjct: 110 S-CDQEYHPS 118
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = -2
Query: 435 LGKGHV*QRGRVGERALSRGRGFSFLPGRGCAFRRGR 325
L KG V +GR+G R RGRG + PGRG RGR
Sbjct: 83 LNKGSV--QGRLGARG--RGRGMARGPGRGMVGARGR 115
>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 419 FDNGVGLGNVHFHGVGDFLFYRVGDVLFDGVGN 321
FD+G+G+G H H YRV DV +DG G+
Sbjct: 793 FDDGIGVGIAHNH-------YRVSDVDYDGAGS 818
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 314 SSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKE 493
S S P + HP P NP P S + P PS SS ++ PS
Sbjct: 468 SPISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSDPSPNPSSNPSSEPSPNP 527
Query: 494 GALPS-TCSQSTDPSPS 541
+ PS + S ++P PS
Sbjct: 528 ISNPSISTSPISNPHPS 544
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 347 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQST 526
P P NP S + P T P+ + S ++ PS + PS+ + S+
Sbjct: 511 PSPNPSSNPSSEPSPNPISNPSISTSPISNPHPSSNPSPHPSSNPSSEPSPNPSS-NPSS 569
Query: 527 DPSPS 541
DPSP+
Sbjct: 570 DPSPN 574
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/67 (22%), Positives = 27/67 (40%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V V
Sbjct: 197 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYSWVSVATYSLVSV 256
Query: 326 GNRNFLN 306
N+++
Sbjct: 257 ATYNWVS 263
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 5 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 64
Query: 326 GNRNFLN 306
N+++
Sbjct: 65 ATYNWVS 71
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 13 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 72
Query: 326 GNRNFLN 306
N+++
Sbjct: 73 ATYNWVS 79
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 21 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 80
Query: 326 GNRNFLN 306
N+++
Sbjct: 81 ATYNWVS 87
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 29 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 88
Query: 326 GNRNFLN 306
N+++
Sbjct: 89 ATYNWVS 95
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 37 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 96
Query: 326 GNRNFLN 306
N+++
Sbjct: 97 ATYNWVS 103
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 45 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 104
Query: 326 GNRNFLN 306
N+++
Sbjct: 105 ATYNWVS 111
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 53 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 112
Query: 326 GNRNFLN 306
N+++
Sbjct: 113 ATYNWVS 119
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 61 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 120
Query: 326 GNRNFLN 306
N+++
Sbjct: 121 ATYNWVS 127
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 69 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 128
Query: 326 GNRNFLN 306
N+++
Sbjct: 129 ATYNWVS 135
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 77 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 136
Query: 326 GNRNFLN 306
N+++
Sbjct: 137 ATYNWVS 143
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 85 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 144
Query: 326 GNRNFLN 306
N+++
Sbjct: 145 ATYNWVS 151
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 93 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 152
Query: 326 GNRNFLN 306
N+++
Sbjct: 153 ATYNWVS 159
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 101 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 160
Query: 326 GNRNFLN 306
N+++
Sbjct: 161 ATYNWVS 167
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 109 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 168
Query: 326 GNRNFLN 306
N+++
Sbjct: 169 ATYNWVS 175
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 117 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 176
Query: 326 GNRNFLN 306
N+++
Sbjct: 177 ATYNWVS 183
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 125 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 184
Query: 326 GNRNFLN 306
N+++
Sbjct: 185 ATYNWVS 191
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 133 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 192
Query: 326 GNRNFLN 306
N+++
Sbjct: 193 ATYNWVS 199
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 141 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 200
Query: 326 GNRNFLN 306
N+++
Sbjct: 201 ATYNWVS 207
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 149 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 208
Query: 326 GNRNFLN 306
N+++
Sbjct: 209 ATYNWVS 215
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 157 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 216
Query: 326 GNRNFLN 306
N+++
Sbjct: 217 ATYNWVS 223
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 165 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 224
Query: 326 GNRNFLN 306
N+++
Sbjct: 225 ATYNWVS 231
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 327
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 173 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 232
Query: 326 GNRNFLN 306
N+++
Sbjct: 233 ATYNWVS 239
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGL 399
WV + WV + +W +NWV DN V +
Sbjct: 285 WVSVATYSWVSVATYSWVSVATYNWVSVATDNWVSV 320
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 344 HPLPGRKE-NPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQ 520
HP P +++ +P P + R P + Q P PS + Q S+ P + P T S
Sbjct: 202 HPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRHNQQQTPETQST 261
Query: 521 STDP 532
+ P
Sbjct: 262 TEIP 265
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 347 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKE 493
P P R NP P +A P+ PR + P P +G S +A PS E
Sbjct: 846 PTPLRPTNPTPAHAASKPSNPR-PSNPTPKHAMGEGVSDNSAEPPSPGE 893
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 508
P + HP PG P+ + +P +PR T PLP G S + P + P+
Sbjct: 141 PSFQDHPGPGVMPQMPPQMAPGTPLMPRIPTPPLPQNMGL-GLSRTSTPSPELRVSPSPT 199
Query: 509 TCSQST 526
++ST
Sbjct: 200 LKTEST 205
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 317 SCSLPR--RKAHPLPGRKENPLPRESARSPTLPRCQT 421
+C LPR R + P PGR NP R + +P C T
Sbjct: 4 TCYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCAT 40
>SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPR--ESARSPTL-PRCQTCPLPS*RDCQGTSSRTATLPSRKEGA 499
PRR PL G E+ E P L PR P+P R + ++ LP +
Sbjct: 351 PRRMLTPLQGSLESNQGSLLEQQGPPVLKPRRMAPPVPHPRAQERVKQHSSPLPPASYPS 410
Query: 500 LPSTCSQSTDPSP 538
PS QS+ P+P
Sbjct: 411 HPSPSDQSSLPNP 423
>SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4)
Length = 334
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 522 RQTRPRQGICARTLPPLKRKVHVPV-EVHVPRSFT 623
R +R R G CA T+PP +R+ + H+PR T
Sbjct: 286 RASRSRDGACAPTMPPPERQALACLRHTHLPRRAT 320
>SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42)
Length = 315
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 522 RQTRPRQGICARTLPPLKRKVHVPV-EVHVPRSFT 623
R +R R G CA T+PP +R+ + H+PR T
Sbjct: 209 RASRSRDGACAPTMPPPERQALACLRHTHLPRRAT 243
>SB_21164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -3
Query: 506 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRV 351
W R + W + WY + W R M D G+ ++G +YRV
Sbjct: 77 WYRVTIDQWYRVTIDQWYRVTIDQWYRVMIDQWYGVTIDQWYGATIDQWYRV 128
>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 PLPRESARSPTLP--RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDPSPS 541
P R S +P P R P+P R S T PS+ G PS S +DP+PS
Sbjct: 109 PPSRRSDLAPVPPSRRSDLTPVPLSRRSDLRSDWTPAPPSKICGRTPSPPSWRSDPNPS 167
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 347 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 505
PLP + PLP + + P P PLP + G+ + S K+ LP
Sbjct: 450 PLPSDEPPPLPPDEEKPPPPPAPALPPLPLPPELPGSPGDSPPATSPKQPPLP 502
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +2
Query: 281 GSPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 460
G R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 1392 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 1450
Query: 461 SRTATL----PSRKEGALPSTCSQSTDP 532
++ + L P + + ST +++ +P
Sbjct: 1451 AKPSKLRLDAPKPQSALVTSTKTKAVEP 1478
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +2
Query: 281 GSPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 460
G R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 263 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 321
Query: 461 SRTATL----PSRKEGALPSTCSQSTDP 532
++ + L P + + ST +++ +P
Sbjct: 322 AKPSKLRLDAPKPQSALVTSTKTKAVEP 349
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 467 TATLPSRKEGALPSTCSQSTDPSPSRYMCQNLTPV 571
TATLP R+ L S+ S +T+PS R N++PV
Sbjct: 915 TATLPVRRVRRLDSSDSDATNPSEERDR-HNISPV 948
>SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)
Length = 369
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 504 GKAPSFRL-GRVAVRELVP*QSL*LGK-GHV*QRGRVGERALSRGRGFSFLPGRGCAFRR 331
G+ FR+ G V E V + GK GHV RG+V R +RG+ + +P G + R
Sbjct: 68 GRVTPFRVYGHVPTHERVSRRVHTHGKYGHVPARGKVYGRVPARGKVYGRVPTYGKVYER 127
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 281 GSPQNRNCR*ESSCSLPRRKAHPLPGRKENPL-PRESARSPTLPRCQTCP 427
G P N E + P+PGR +P+ PR S + PT T P
Sbjct: 24 GPPSPLNTEMEPPIDVQFTSPQPMPGRNSSPIVPRASPQPPTARPYGTSP 73
>SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06)
Length = 673
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 397 PNPTPLSNMSLTQLKRLSRYQF 462
PNP P +NM+ +LK RY++
Sbjct: 524 PNPCPSTNMTCVELKGTPRYRY 545
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,165
Number of Sequences: 59808
Number of extensions: 257744
Number of successful extensions: 972
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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