Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0326
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    30   1.3  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    27   9.0  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +2

Query: 317 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 496
           S S PRR+    P ++    PR + RSP+ PR +       R  +    R     SR   
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQV---SRSRS 144

Query: 497 ALPSTCSQSTDPSPSR 544
             P    +S  P P++
Sbjct: 145 PPPRRQQRSRSPPPAK 160


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +2

Query: 311 ESSCSLPRRKAHPLPGRKENPLPRESA-RSPT-LPRCQTCPLPS*RDCQGTSSRTATLPS 484
           ++  S+P     P P   E P P  +A  +P   P  +  P P+           AT P+
Sbjct: 543 DAPSSVPEETPAPAPAADETPAPAPAAEETPAPAPAAEETPAPA----PAAEETPATAPA 598

Query: 485 RKEGALPSTCSQSTDPSPS 541
            +E   P+  +  T P+P+
Sbjct: 599 AEETPAPAPAADET-PAPA 616


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 506 WVRHLLFDWV-GLRYVNWYLDNLFNWVRDMFDN 411
           W+  +  DW+ G   V+ YL N F    +MFDN
Sbjct: 357 WLAWVAHDWIDGAARVDEYLVNYFKKHNNMFDN 389


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 407 PRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDPSPSRYMCQNLTPV 571
           P+CQ    P  + CQ T  + A +  +++ A   T S +      +  CQ   PV
Sbjct: 164 PQCQQASAPQCQQCQNTCQQFAPV-CQQQCAPQCTISSAPQCQQCQTTCQQFAPV 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,098
Number of Sequences: 27780
Number of extensions: 190605
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)