Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0326
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66850.1 68418.m08428 protein kinase family protein contains ... 36 0.018
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.17
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 2.8
At5g10490.1 68418.m01215 mechanosensitive ion channel domain-con... 29 3.6
At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 3.6
At2g40070.1 68415.m04923 expressed protein 29 3.6
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 4.8
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 4.8
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 4.8
At5g25270.1 68418.m02996 expressed protein 27 8.4
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 27 8.4
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 36.3 bits (80), Expect = 0.018
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = +2
Query: 284 SPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSS 463
SPQ R+ R + P R + PL + PR+S SP PR T RDC +
Sbjct: 252 SPQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC--CNV 309
Query: 464 RTATLPSRKEGALPSTCSQSTDPSP 538
LP GA S+ S ++ PSP
Sbjct: 310 HPLPLP---PGATCSSSSAASVPSP 331
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/73 (31%), Positives = 29/73 (39%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 508
PRR L R+ +PLPR PR ++ P R R P R+ A PS
Sbjct: 212 PRRPRERLSPRRRSPLPRRGLS----PRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPS 267
Query: 509 TCSQSTDPSPSRY 547
+ P P RY
Sbjct: 268 RGRSPSSPPPRRY 280
Score = 27.5 bits (58), Expect = 8.4
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSP--TLPRCQTCPLPS*RDCQGTSSRTATLPSR-KEGA 499
P R+ PLP R+ +P PR RSP P + P R + SS + R G
Sbjct: 295 PVRRRSPLPLRRRSPPPRR-LRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGR 353
Query: 500 LPSTCSQSTDPSPSR 544
+ S S+ PSP R
Sbjct: 354 RGRSSSYSSSPSPRR 368
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 332 RRKAHPLPGRKENPLPRESARSPTLP-RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 508
RR H GR+++P P RSP+ P R + P P R R+ + P+R+ +
Sbjct: 293 RRPTHE--GRRQSPAPSRRRRSPSPPARRRRSPSPPAR-----RRRSPSPPARRHRSPTP 345
Query: 509 TCSQSTDPSP 538
Q PSP
Sbjct: 346 PARQRRSPSP 355
>At5g10490.1 68418.m01215 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 519
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +2
Query: 353 PGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDP 532
P N +P E+ P + P P + GT A R G + ST + TD
Sbjct: 385 PVSDTNKVPEETVAKPVIKAVSKPPTPKDTETSGTEKPKA---KRSGGTIKSTKTDETDS 441
Query: 533 SPS 541
S S
Sbjct: 442 STS 444
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.7 bits (61), Expect = 3.6
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 284 SPQNRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 460
SP + S LP P P G PLP+ S +P P + PS + +
Sbjct: 46 SPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITPSPPSPTTPS--NPRSPP 103
Query: 461 SRTATLPSRKEGALPSTCSQSTDPSP 538
S P+ G+ P T S +T PSP
Sbjct: 104 SPNQGPPNTPSGSTPRTPS-NTKPSP 128
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 401 TLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDPSPS 541
T P T P PS T+S T T P P+T S PSPS
Sbjct: 3 TAPSPGTTPSPS-PPSPPTNSTTTTPPPAASSPPPTTTPSSPPPSPS 48
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +2
Query: 353 PGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTDP 532
P R PL R +ARS T T P PS T SR++T P+R+ A S + + +P
Sbjct: 281 PSRSTTPLSRSTARSSTPTSRPTLP-PS-----KTISRSST-PTRRPIASASAATTTANP 333
Query: 533 SPSRYMCQNLTPVE 574
+ S+ + P +
Sbjct: 334 TISQIKPSSPAPAK 347
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 326 LPRRKAHPLPGRKENPLPRESARSPTLP 409
+P K P+P K P+P S SP++P
Sbjct: 39 VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 508
P P P ++E P P ES + P P+ Q P + G+ + +P+ A P
Sbjct: 562 PEESPKPQPPKQETPKPEESPK-PQPPK-QEQPPKTEAPKMGSPPLESPVPNDPYDASPI 619
Query: 509 TCSQSTDPSPSRYMCQNLTP 568
+ PSPS + +P
Sbjct: 620 KKRRPQPPSPSTEETKTTSP 639
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 407 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 321
VG+G+V GVGD VGDV DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
>At5g25270.1 68418.m02996 expressed protein
Length = 540
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 452 GTSSRTATLPSRKEG-ALPSTCSQSTDPSPS 541
GT+ R + + G +PST S +TDP+PS
Sbjct: 311 GTNQREESTTQQTPGQTIPSTPSSTTDPAPS 341
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.5 bits (58), Expect = 8.4
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSP--TLPRCQTCPLPS*RDCQGTSSRTATLPSR-KEGA 499
P R+ PLP R+ +P PR RSP P + P R + SS + R G
Sbjct: 302 PVRRRSPLPLRRRSPPPRR-LRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGR 360
Query: 500 LPSTCSQSTDPSPSR 544
+ S S+ PSP R
Sbjct: 361 RGRSSSYSSSPSPRR 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,333,006
Number of Sequences: 28952
Number of extensions: 185786
Number of successful extensions: 620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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