Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0325
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       29   3.3  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   4.4  

>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
           protein T10G3.5b protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = -1

Query: 526 RELVLSVNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQL----NGLEESFQPLDGLP 359
           REL  SV+    T+ +K + L+ +   + E+N+ ++ ++ Q+    N + E  Q ++ L 
Sbjct: 663 RELEASVSSRDTTVSTKESELSELKGKLTESNSFIEELKVQVEKVSNEISEKQQEVENLM 722

Query: 358 AQLTD 344
           A++ D
Sbjct: 723 AEMRD 727


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
           protein T10G3.5a protein.
          Length = 1205

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = -1

Query: 526 RELVLSVNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQL----NGLEESFQPLDGLP 359
           REL  SV+    T+ +K + L+ +   + E+N+ ++ ++ Q+    N + E  Q ++ L 
Sbjct: 665 RELEASVSSRDTTVSTKESELSELKGKLTESNSFIEELKVQVEKVSNEISEKQQEVENLM 724

Query: 358 AQLTD 344
           A++ D
Sbjct: 725 AEMRD 729


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = -1

Query: 526 RELVLSVNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQL----NGLEESFQPLDGLP 359
           REL  SV+    T+ +K + L+ +   + E+N+ ++ ++ Q+    N + E  Q ++ L 
Sbjct: 665 RELEASVSSRDTTVSTKESELSELKGKLTESNSFIEELKVQVEKVSNEISEKQQEVENLM 724

Query: 358 AQLTD 344
           A++ D
Sbjct: 725 AEMRD 729


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 505  NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTD 344
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,856
Number of Sequences: 27780
Number of extensions: 236314
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)