Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0325
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39580.1 68415.m04855 expressed protein                             30   1.0  
At5g62860.1 68418.m07889 F-box family protein-related contains T...    30   1.3  
At4g21640.1 68417.m03136 subtilase family protein similar to sub...    29   3.1  
At3g52990.1 68416.m05841 pyruvate kinase, putative similar to py...    28   5.4  
At3g51110.1 68416.m05597 crooked neck protein, putative / cell c...    28   5.4  
At2g36580.1 68415.m04486 pyruvate kinase, putative similar to py...    28   5.4  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    27   9.5  
At2g28010.1 68415.m03394 aspartyl protease family protein contai...    27   9.5  

>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 154  KNRTDIIKQLICYFKKTMELRLPRRASESNSKAWIFSVGFRSLEDPE----QCHRSIWIE 321
            ++R DI+K  +  +   +EL+L     +SN    +FS GF  L   E     C + IW +
Sbjct: 1177 ESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIWNQ 1236

Query: 322  FLRF 333
            +  +
Sbjct: 1237 YAEY 1240


>At5g62860.1 68418.m07889 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 377

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 563 LTIGGIGSRGPPSRTSSLCKLHFIYY--HVKA 474
           L I GI +  P +R+S LC   FIYY  HV++
Sbjct: 90  LDIQGIWNHSPEARSSGLCIKEFIYYIAHVES 121


>At4g21640.1 68417.m03136 subtilase family protein similar to
           subtilase SP1 [Oryza sativa] GI:9957714
          Length = 733

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 181 LICYFKKTMELRLPRRASESNSKAWIFSVGFRSLEDPE 294
           L+ +    +       AS+SNSK +I  +G R  +DPE
Sbjct: 18  LVLFLNTELSFLTAEGASDSNSKVYIVYLGQREHDDPE 55


>At3g52990.1 68416.m05841 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 527

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 553 GELGPGAPPRELVLSVNYILF--TIMSKPNVLTRILDAIAE 437
           G LG   PP ++ L     L+   +  KP VLTR++D++ +
Sbjct: 281 GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVLTRVVDSMTD 321


>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 413

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 262 SVGFRSLEDPEQCHRSIWIEFLRF*C*NQSIERANR--PKAGTILPARLTEF 411
           SV  R+LED    + ++W+++  F   N+S+  A     +A  ILP R+ +F
Sbjct: 92  SVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILP-RVDQF 142


>At2g36580.1 68415.m04486 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 527

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 553 GELGPGAPPRELVLSVNYILF--TIMSKPNVLTRILDAIAE 437
           G LG   PP ++ L     L+   +  KP VLTR++D++ +
Sbjct: 281 GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVLTRVVDSMTD 321


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
 Frame = +2

Query: 26  SNNNGF----VCNKHNCG-VYSIC 82
           +N NGF    VCN+H+CG +Y  C
Sbjct: 298 NNENGFFTCSVCNQHSCGFMYKCC 321


>At2g28010.1 68415.m03394 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 396

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 508 VNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLE 389
           V+  +F   +KP      LDA++  NT+++++ T  + LE
Sbjct: 227 VSTTMFMTTAKPGFYYLNLDAVSVGNTRIETMGTTFHALE 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,323
Number of Sequences: 28952
Number of extensions: 212865
Number of successful extensions: 458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)