Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0323
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.64 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 670 HFYYDPCRFSI*LLAVFTIFYFY 738
           +FYY    F++ LL +  I+YFY
Sbjct: 240 YFYYAFILFTVHLLLLVCIYYFY 262



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 659 YYYLISITTHVDLVF 703
           Y+Y +SIT +V L+F
Sbjct: 58  YFYCVSITFNVHLLF 72



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 670 HFYYDPCRFSI*LLAVFTIFYF 735
           +FYY    F++ LL +  I+YF
Sbjct: 115 YFYYAFIIFTVHLLFLLCIYYF 136


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 597 SNSHSNFDLDLGDPSCTEXP 656
           +  + NFD  +G+P C + P
Sbjct: 313 ATKNPNFDKMIGNPICVQIP 332


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 655 GNSVQLGSPKSRSKLLCELESGC 587
           G +  LGSP+       ELE+ C
Sbjct: 296 GRTAFLGSPEEAETFFRELEAPC 318


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 655 GNSVQLGSPKSRSKLLCELESGC 587
           G +  LGSP+       ELE+ C
Sbjct: 296 GRTAFLGSPEEAETFFRELEAPC 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,929
Number of Sequences: 336
Number of extensions: 3977
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)