Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0323
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   4.9  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   6.5  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.6  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 182 PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 313
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 321 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 208
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 415 ALSQVTPGCCAGSPPQSLVLIARFSHYC 332
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 682 RNRNEVVIFGNSVQLGSPKSRSKLLCELESGCDF 581
           +N+N++ I  N   +GS KS    L EL     F
Sbjct: 45  KNQNKLEILNNETTIGSTKSSVSSLPELNRNVSF 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,203
Number of Sequences: 5004
Number of extensions: 60368
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)