Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0323
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    32   0.42 
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    30   1.7  
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    30   2.2  
12_02_1222 + 27145264-27148287                                         29   2.9  
04_01_0305 - 4141692-4142912                                           28   9.0  
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353...    28   9.0  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 183 RSDARLEFTGYKKLNETIREIVLYYDNTIH 272
           R DA + F G K + E++++ +LYYDN ++
Sbjct: 123 RFDAVVHFAGLKAVGESVQKPLLYYDNNVN 152


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 RSDARLEFTGYKKLNETIREIVLYYDNTI 269
           R +A + F G K + E++++ +LYYDN +
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYDNNL 110


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 RSDARLEFTGYKKLNETIREIVLYYDNTI 269
           R DA + F G K + E++++ +LYYD+ +
Sbjct: 93  RFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>12_02_1222 + 27145264-27148287
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 12  RLEGGAASRCNYTTLQLISQGGWRIYAVNVYGL 110
           R +  AAS CN+T +   + GG  + AV V GL
Sbjct: 49  RWDAAAASPCNFTGVDCANSGGGGVTAVAVEGL 81


>04_01_0305 - 4141692-4142912
          Length = 406

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 129 RWAVSSFTHLSNKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTIHYRL 281
           RW V+  T LSN+KS       RL     +  NE  R    Y  +T+ YR+
Sbjct: 67  RWLVNENTELSNEKSYLESRVRRLVNENTELSNEKRR--AAYVSSTLEYRV 115


>02_02_0592 -
           11934238-11934249,11934755-11934835,11935166-11935324,
           11936362-11936442,11936523-11936591,11937147-11937260,
           11937805-11937858,11938788-11938915,11940527-11940782
          Length = 317

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 218 KIKRNNTRNSSIL---RQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALWR 376
           K K NN   +S L    +HD   ++NK    K +  + Y  + ++   D+ + LWR
Sbjct: 97  KSKANNLEENSNLIGTMEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWR 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,342
Number of Sequences: 37544
Number of extensions: 396757
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)