Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0323
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    33   0.28 
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 682 RNRNEVVIFGNSVQLGSPKSRSKLLCELESGCDFFGVYSFRID 554
           +N  EV   G S+Q+ +  S +KL  E   G D FGVY+ R D
Sbjct: 541 KNGKEVEANGVSIQIFTQGSSTKLTLENFDGSDNFGVYTCRAD 583


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 682 RNRNEVVIFGNSVQLGSPKSRSKLLCELESGCDFFGVYSFRID 554
           +N  EV   G S+Q+ +  S +KL  E   G D FGVY+ R D
Sbjct: 514 KNGKEVEANGVSIQIFTQGSSTKLTLENFDGSDNFGVYTCRAD 556


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 682 RNRNEVVIFGNSVQLGSPKSRSKLLCELESGCDFFGVYSFRID 554
           +N  EV   G S+Q+ +  S +KL  E   G D FGVY+ R D
Sbjct: 514 KNGKEVEANGVSIQIFTQGSSTKLTLENFDGSDNFGVYTCRAD 556


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 682 RNRNEVVIFGNSVQLGSPKSRSKLLCELESGCDFFGVYSFRID 554
           +N  EV   G S+Q+ +  S +KL  E   G D FGVY+ R D
Sbjct: 514 KNGKEVEANGVSIQIFTQGSSTKLTLENFDGSDNFGVYTCRAD 556


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 345 SLIIVFSYIC*SFVLCLVNLLIICSV 268
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 345 SLIIVFSYIC*SFVLCLVNLLIICSV 268
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,042
Number of Sequences: 27780
Number of extensions: 350716
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)