Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0318
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.26 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.59 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   7.3  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   7.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.6  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 290 IIINFCLSQICFFKRGITKYVFTYSIKL*TMIILQYIKI 174
           III   L+ +C+F  G+  + F + I    MI++  + I
Sbjct: 503 IIIPVTLTSVCYFMIGLNSHGFRFYIACGIMILVANVAI 541


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 290 IIINFCLSQICFFKRGITKYVFTYSIKL*TMIILQYIKI 174
           III   L+ +C+F  G+    F + I    MI++  + I
Sbjct: 503 IIIPVILTSVCYFMIGLNSQGFRFYIACGIMILVANVAI 541


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 382 FHIPTRNNCLKQ 347
           F +PT +NCLK+
Sbjct: 19  FELPTTHNCLKK 30


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 195 YFTIH*NLLKNIFTKYR 145
           YFT H + L NI+T  +
Sbjct: 10  YFTTHHDTLHNIYTSMK 26


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 195 YFTIH*NLLKNIFTKYR 145
           YFT H + L NI+T  +
Sbjct: 10  YFTTHHDTLHNIYTSMK 26


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 620 IDTAKPGCGLTRE 582
           +D +KPGC  T E
Sbjct: 401 LDLSKPGCSYTGE 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,161
Number of Sequences: 336
Number of extensions: 2908
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)