Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0317
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...   116   4e-25
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    54   5e-06
UniRef50_Q2H9S9 Cluster: Predicted protein; n=1; Chaetomium glob...    35   2.3  
UniRef50_UPI0000E1E876 Cluster: PREDICTED: hypothetical protein;...    33   7.1  
UniRef50_Q2GPT2 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score =  116 bits (280), Expect = 4e-25
 Identities = 66/131 (50%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
 Frame = +3

Query: 336  YKTCKRNIMN-ANAIFLHAARTH-RPFNSLNLVFAE*PLQRRGS*ATL-IFTTKGHESIR 506
            YKTC R +M  A+ +F HAARTH     SL   F    +        + +    G ESIR
Sbjct: 814  YKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIR 873

Query: 507  KYPKSASERYFDKAKRQENRLIVTAADYPRTPSHTRASYR*RPRHILIDPSHRVTLLLDA 686
            K+ KS SERYFDKA R +NRLIV AADY   P H  AS+R RPRH+L DPS  +TL LD 
Sbjct: 874  KHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDT 933

Query: 687  YSSSIRSRLKT 719
            +SS+ RSRL++
Sbjct: 934  FSSNTRSRLRS 944


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 53.6 bits (123), Expect = 5e-06
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
 Frame = +3

Query: 336 YKTCKRNIMNANA-IFLHAARTHRPFNSLNLVFAE*PLQRRGS*ATLIFTTKGHE----- 497
           YKTC R ++  +  +F H ++ +  F+ L  VF    L++       I     H      
Sbjct: 25  YKTCIRPVITYSCPVFAHMSKDN--FHKLQ-VFQNRVLRKVTGTPWYIRRVDLHRNLEIP 81

Query: 498 SIRKYPKSASERYFDKAKRQENRLIVTAADYPRTPSHTRASYR*RPRHILIDPSHRVTLL 677
           SI  Y KS +  YF+KA    + L+V+AA+Y   P+  R   R RPRHI IDP   +T +
Sbjct: 82  SIWTYVKSLTISYFEKAANHPSPLVVSAANYQPVPNAARP--RRRPRHIFIDPPDEITAV 139

Query: 678 LDAY 689
            D Y
Sbjct: 140 NDQY 143


>UniRef50_Q2H9S9 Cluster: Predicted protein; n=1; Chaetomium
           globosum|Rep: Predicted protein - Chaetomium globosum
           (Soil fungus)
          Length = 323

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +3

Query: 60  VDGSIFYRFCGQVSVAHRRQQSAAQPNRRIESPPELDVGILHPDHPLRSINTRLVGVKYI 239
           V G +    CG+ +   RR QS        +  PE   GIL   H L S   +LVG +Y 
Sbjct: 186 VKGKMRCSTCGRQAAIRRRPQSIINIQHASDQSPEPQPGILPTSHGLGSPPIQLVGGEYQ 245

Query: 240 H 242
           H
Sbjct: 246 H 246


>UniRef50_UPI0000E1E876 Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 141

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 490 PFVVKINVAHEPRRCNGYSAKTRFKELKGLW 398
           PFVV     HEPRRC+  S   R + ++GLW
Sbjct: 85  PFVVT-EAFHEPRRCSSASLGRRVRGVEGLW 114


>UniRef50_Q2GPT2 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 326

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 159 PELDVGILHPDHPLRSINTRLVGVKYIHPSSHP*YTLDIPTTQSPSATALRLPFIYFRYY 338
           P ++  +  P+ P  +I   +    Y++  SH    L IP+   P+A A RLP + F   
Sbjct: 156 PSVEWALKLPNRPTEAIE--MATKAYLNTLSHAHGALGIPSQPMPAAQAARLPTLCFSVN 213

Query: 339 KTCK 350
           KT +
Sbjct: 214 KTAE 217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,955,559
Number of Sequences: 1657284
Number of extensions: 14903859
Number of successful extensions: 35106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35096
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)