Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0317
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 33 0.054
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 29 0.51
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.2
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 27 2.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 4.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 6.2
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 6.2
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 6.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 6.2
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 32.7 bits (71), Expect = 0.054
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 75 FYRFCGQVSVAHRRQQSAAQPNRRIESPPELDVGILHPDHPLR 203
+YR+ + +V +RQ SA Q ++ E+ L P HP+R
Sbjct: 130 YYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIR 172
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 553 RLALSKYLSDADFGYFLMDSWPFVVKINVAH-EPRRCNGYSAKTRFK 416
++ + K ++D + + SWP +K+NV H E R GY +FK
Sbjct: 25 QIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFK 71
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 507 KYPKSASERYFDKAKRQENRLIVTAADYPRTPSHTRASYR*RPRHILIDPSHRVTLLLDA 686
+Y +S S++ F + N +VT + RTP H R SY R + PS ++
Sbjct: 83 RYARS-SKQSFQREDSGYNDDVVTNSSSHRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQ 141
Query: 687 YSSSIRSR 710
S +RSR
Sbjct: 142 SRSPVRSR 149
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 547 PSVKKTALS*PPLTIPGLRLTHEPV 621
PS+ +A S PP++ PGLR +H PV
Sbjct: 476 PSLSNSAAS-PPVSSPGLRRSHIPV 499
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 596 DSVSHTSQLPVTPQTYPYRSIPSSNVVVRRLQF 694
+SVS S +P T QT IPS +++L+F
Sbjct: 512 ESVSTLSSIPRTEQTSVANRIPSKTAALQKLKF 544
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 140 VWLCR*LLTSMSDANLPT-EAIKNTSVNALGDGESH 36
+WL T+ D+NLP+ + +K +ALG + H
Sbjct: 454 IWLTEFACTNWDDSNLPSLDEVKTLMTSALGFLDGH 489
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +3
Query: 99 SVAHRRQQSAAQPNRRIESPPELDVGIL--HPDHPLRSINTRLVGVKYIHPSSHP*YTLD 272
S AH + S+A PN S +DVG H +P S + Y SS+
Sbjct: 309 SFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPYPQPSNLDAINAKTYFQSSSNSPAPYV 368
Query: 273 IPTTQSPSATALR 311
PSAT+ +
Sbjct: 369 YRNNLPPSATSFQ 381
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 483 TKGHESIRKYPKSASERYFDKAKRQENRLIVTA 581
T+G S+RK A YF + + ++VTA
Sbjct: 69 TRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTA 101
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 501 IRKYPKSASERYFDKAKRQENRLI 572
IRKY ++ E FDK ++ ++LI
Sbjct: 98 IRKYLETIEENEFDKVRKSSDKLI 121
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 476 FHDKRP*IHQKIPEVSVGKVLR*SQASRKPPYRDRR 583
F+D + + +P+V++ R +AS+ P+ DR+
Sbjct: 781 FYDNNNNLEEDLPDVNISISSRNEEASKTKPFDDRQ 816
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,170
Number of Sequences: 5004
Number of extensions: 61625
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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