Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0317
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594...    30   1.6  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    29   3.7  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    29   3.7  
12_01_0377 - 2939384-2939505,2939629-2939695,2940324-2940543,294...    28   6.5  
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638...    28   6.5  
04_04_1108 + 30961600-30962013,30963131-30964465                       28   6.5  

>02_05_1313 -
           35658599-35658683,35659231-35659313,35659394-35659489,
           35659615-35659693,35659775-35659852,35659989-35660030,
           35660435-35660532,35660628-35660747,35660840-35660926
          Length = 255

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 475 FSRQKAMNPSENTRSQRRKGTSIKPSVKKTALS*PPLTIPGLRLTHEP-VTGD 630
           FS+  A +PS+ T SQ     S  PS  + A S  PLT+  +    +  +TG+
Sbjct: 3   FSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGE 55


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 359 NECQCHFPTCRPHPQTLQFLKSRF-CGIAVAAPWFVSNVDFH 481
           NE   HF     H   L  L  R  CG     PW + NV++H
Sbjct: 823 NESCGHFEWLPKHQNNLMPLLLRLNCGKQARRPWILQNVNYH 864


>03_03_0246 +
           15789635-15794227,15794314-15794555,15794630-15794771,
           15796089-15796272,15796349-15796696,15796753-15797450,
           15798208-15798900
          Length = 2299

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 523 RRKGTSI-KPSVKKTALS*PPLTIPGLRLTHEPVTGDA 633
           R +G+S+ KP   K ++  PPL +P LR  HE   G A
Sbjct: 52  RSRGSSVSKPQPPKLSVP-PPLNLPSLRKEHERFDGAA 88


>12_01_0377 -
           2939384-2939505,2939629-2939695,2940324-2940543,
           2940655-2940731,2940813-2940878,2940970-2941018,
           2941131-2941181,2941262-2941314,2941432-2941486,
           2941563-2941651,2941742-2941827,2941933-2941989,
           2942086-2942275,2943847-2944005
          Length = 446

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 99  SVAHRRQQSAAQPNRRIESPPELDVGILHP-DHPLRSINTRLVGVKYIHPS 248
           S+ + R   AA+PN+  ES P +  G+L P D P  S +  + G+  I PS
Sbjct: 333 SLENPRTPLAAEPNKAAESQPNIQDGLLMPSDAP--SSSQDIGGMMKIVPS 381


>08_01_0718 -
           6365506-6366047,6381623-6381937,6382857-6383082,
           6383295-6383458,6383498-6383934,6384395-6384669
          Length = 652

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 113 SMSDANLPTEAIKNTSVNALGDGE 42
           SM D ++PT  + +T++N +GD E
Sbjct: 423 SMEDTDIPTSLLTDTNLNLIGDQE 446


>04_04_1108 + 30961600-30962013,30963131-30964465
          Length = 582

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 481 RQKAMNPS---ENTRSQRRKGTSIKPSVKKTALS*PPLTIPGLRLTHEPVT 624
           + + +NPS   E +R++   GT  KP  KKT  +  P + P  +L  E ++
Sbjct: 190 QNECVNPSADREESRTEPPNGTMTKPGKKKTTSASGPKSHPAGKLQEEHIS 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961,194
Number of Sequences: 37544
Number of extensions: 432209
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)