Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0317
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 33 0.31
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2) 31 0.71
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45043| Best HMM Match : Rho_N (HMM E-Value=0.0046) 28 8.8
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 28 8.8
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 654 DL*GYVWGVTGNWLVCETESWD-SQRRSR*GGFLDAWLYRSTFPTLTSGIF*WIHGLLS 481
+L +++G +W E SW + S G L +WLY +L+ + W +G+LS
Sbjct: 481 ELSSWLYGELSSWFSGELSSWFYGELSSSLSGELSSWLYSELSSSLSGELSSWFYGVLS 539
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 633 GVTGNWLVCETESWDS-QRRSR*GGFLDAWLYRSTFPTLTSGIF*WIHGLLS 481
G +WL E SW S + RS G L +W Y +L+ + W +G S
Sbjct: 295 GELSSWLYGELSSWFSGELRSSFYGELSSWFYGELSSSLSGELSSWFYGEFS 346
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 654 DL*GYVWGVTGNWLVCETESWD-SQRRSR*GGFLDAWLYRSTFPTLTSGIF*WIHGLLS 481
+L + +G +WL E SW + S G L +WLY + + W +G LS
Sbjct: 449 ELSSWFYGELSSWLYGELSSWFYGELSSSLSGELSSWLYGELSSWFSGELSSWFYGELS 507
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 156 PPELDVGILHPDHPLRSINTRLVGVKYIHPSSHP*YTLDIPTTQSPSATALRLPF 320
PP + + P HP T + +YIHP S P + +P T P + + LPF
Sbjct: 95 PPSRYIHLPFPLHPSPLPATSIPPSRYIHPPS-PLHPSPLPATSIPPSRYIHLPF 148
>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
Length = 245
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 444 LQRRGS*ATLIFTTKGHESIRKYPK--SASERYFDKAKRQENRLIVTAADYPRTPS 605
+ +GS TL T+G ES P+ +ER+FD+++R R + + +YP PS
Sbjct: 179 INNQGSKFTL--ETRGSESFSSEPRFFERNERFFDRSERFFERSEIFSENYPPPPS 232
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.3 bits (60), Expect = 6.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 372 HWHSLCFVCKFC 337
HWH CF+C C
Sbjct: 360 HWHDKCFICDIC 371
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 28.3 bits (60), Expect = 6.6
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Frame = +3
Query: 318 FIYFRYYKTCKRNIMNANAIFLHAARTHRPFNSLNLVFAE*PLQRRGS*ATLIFTTKGHE 497
F YFRY + + F+ AA T N+ + P Q + + +T TT G+
Sbjct: 425 FAYFRYMLRHREELYT----FVQAAETE---NNRSSSSQPPPSQDQTTASTATTTTTGNP 477
Query: 498 SIRKYPKSASERYFDKAKRQENRLIVTAADYP-RTPSHTRASYR*RPRHILIDPSHRVTL 674
+ P + + L+VT + + P+H+ A PRH + P+H + L
Sbjct: 478 T----PPQQHKNSLLPQRNHSIALLVTIPRHTMKQPNHSIALLVTIPRHTMKQPNHSIAL 533
Query: 675 LL 680
L+
Sbjct: 534 LV 535
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 531 RYFDKAKRQENRLIVTAADYP-RTPSHTRASYR*RPRHILIDPSHRVTLLLDAYSSSIRS 707
RY K + L+VT +P + +HT A PRH + +H + LLL +++
Sbjct: 683 RYTTKQRNHSIALLVTIPRHPMKQRNHTIALLVTIPRHPMKQRNHSIALLLTIPRHTMKQ 742
Query: 708 R 710
R
Sbjct: 743 R 743
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 619 LARV*DGVLG*SAAVTIRRFS*RLALSKYLSDADFGYFLMDS 494
+ V +GVL T++ S RL + L D GYF MDS
Sbjct: 719 IVNVKEGVLPGGRVTTVKMTSSRLMTYRILEGNDEGYFRMDS 760
>SB_45043| Best HMM Match : Rho_N (HMM E-Value=0.0046)
Length = 589
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 135 PNRRIESP-PELDVGILHPDHPLRS 206
P+ ++ P PE+DV IL P HP R+
Sbjct: 43 PSSILDEPIPEIDVPILRPSHPPRN 67
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 498 SIRKYPKSASERYFDKAKRQENRLIVTAADYPRTPSHTRASYR*RPRHI 644
S+ P + +ERY + E+ V A+ P P H+R S + R R I
Sbjct: 304 SLLNPPTTWAERYGEDEDEVEDDEGVLMANQPANPQHSRRSQQYRARQI 352
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,714,382
Number of Sequences: 59808
Number of extensions: 478362
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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