Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0317
         (720 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros...    30   3.6  
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    29   4.8  
BT010273-1|AAQ23591.1|  990|Drosophila melanogaster RE13779p pro...    29   4.8  
AE014297-2110|AAF55250.2| 1052|Drosophila melanogaster CG31291-P...    29   4.8  
AE014297-2109|AAF55249.2| 1138|Drosophila melanogaster CG31291-P...    29   4.8  
AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein ...    29   8.4  

>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
           Drosophila melanogastercopia-like element 17.6. ).
          Length = 1058

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 331 LKYIKGKRNAVADGLCVVGMSRVY 260
           +KYIKGK N VAD L  + +   Y
Sbjct: 607 IKYIKGKENCVADALSRIKLEETY 630


>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -1

Query: 474  STLLTNHGAATAIPQKRDLRN*RVCGCGRHVGKWHWHSLC 355
            S LLT HG+  A    R L +   C CG     W  H LC
Sbjct: 931  SFLLTGHGSFNAFLHGRALSDTTACACGDPYEDW-MHILC 969


>BT010273-1|AAQ23591.1|  990|Drosophila melanogaster RE13779p
           protein.
          Length = 990

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 524 VGKVLR*SQASRKPPYRDRR*LSQDSVSHTSQ-LPVTPQTYPYRSIPSS 667
           + K L  SQ SR   YR ++  +   +S + + L  TP  YP  S+PS+
Sbjct: 77  ISKYLSPSQKSRISSYRPKKSYASGYLSASKENLASTPSLYPSASVPSA 125


>AE014297-2110|AAF55250.2| 1052|Drosophila melanogaster CG31291-PA,
           isoform A protein.
          Length = 1052

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 524 VGKVLR*SQASRKPPYRDRR*LSQDSVSHTSQ-LPVTPQTYPYRSIPSS 667
           + K L  SQ SR   YR ++  +   +S + + L  TP  YP  S+PS+
Sbjct: 77  ISKYLSPSQKSRISSYRPKKSYASGYLSASKENLASTPSLYPSASVPSA 125


>AE014297-2109|AAF55249.2| 1138|Drosophila melanogaster CG31291-PB,
           isoform B protein.
          Length = 1138

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 524 VGKVLR*SQASRKPPYRDRR*LSQDSVSHTSQ-LPVTPQTYPYRSIPSS 667
           + K L  SQ SR   YR ++  +   +S + + L  TP  YP  S+PS+
Sbjct: 163 ISKYLSPSQKSRISSYRPKKSYASGYLSASKENLASTPSLYPSASVPSA 211


>AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein
           protein.
          Length = 849

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 331 LKYIKGKRNAVADGLCVVGMSRVYQG 254
           +KYIKGK N VAD L  + + + + G
Sbjct: 569 IKYIKGKENHVADALSRIKIEQAFFG 594


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,702,230
Number of Sequences: 53049
Number of extensions: 699391
Number of successful extensions: 1857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)