Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0317
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.54 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.72 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  

>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 486 KGHESIRKYPKSASERYFDKAKRQENR 566
           K     RKY +++ ER  D+A+R+ +R
Sbjct: 50  KNEREYRKYRETSKERSRDRAERERSR 76


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +3

Query: 486 KGHESIRKYPKSASERYFDKAKRQENRLIVTAADYPRTPSHTRASYR 626
           K     RKY +++ ER+ D+ +R+ ++     +       H   +Y+
Sbjct: 284 KNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYK 330


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 229 SSTSIHQVILDTLLTFRPHKVRPPLH 306
           SS  IH     +++T  P +  PPLH
Sbjct: 80  SSNGIHTGFGGSIITIPPTRKLPPLH 105


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 87   CGQVSVAHRRQQSAAQPNRRIESPPELDVGILHPDHPLRSINT 215
            CG VSV  ++Q   + P  R+         +  P + L + NT
Sbjct: 1274 CGTVSVPQQQQLPPSSPQPRLTVNHAYRDAVTVPGNNLIATNT 1316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,448
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)