Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0317
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   2.3  
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    29   4.1  
At1g57730.1 68414.m06550 zinc finger (C3HC4-type RING finger) fa...    28   7.2  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
 Frame = +2

Query: 512 PEVSVGKVLR*SQASRKP--PYRDRR*LSQDSVSHTSQLPV--TPQTYPY----RSIPSS 667
           P  S+G +LR     RK   P  +RR L   SVS TS+ P+  +P T PY     S+PSS
Sbjct: 60  PTPSLG-ILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSS 118

Query: 668 N 670
           N
Sbjct: 119 N 119


>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 30  NNMRLTIT*RVDGSIFYRFCGQVSVAHRRQQSAAQPNRRIESPPELDVGILHPDHPLRSI 209
           +N RLT+  R  G  +   CG++S     Q    + +    S  E  V   HPDHPL  I
Sbjct: 439 HNERLTLFTREAGHFWCNVCGRISNGFSYQYGDMKLDVICCSVLEPFVHPSHPDHPLYYI 498

Query: 210 NTRL 221
           +  +
Sbjct: 499 SPEM 502


>At1g57730.1 68414.m06550 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 174

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 241 IHQVILDTLLTFRPHKVRPPLHCVYP 318
           I Q+IL  ++ F PHK  P L  ++P
Sbjct: 43  ITQLILKDVVNFDPHKTSPLLETIFP 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,355
Number of Sequences: 28952
Number of extensions: 330856
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)