Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0314
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   3.4  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   7.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 450 VSSFTHLSIIKKKKKNSRGGPVPNSP 527
           +SS  HL +++    N   GP  NSP
Sbjct: 315 ISSIQHLPLVQPHHMNDMHGPTDNSP 340


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 88  PVLEGPKSTESESRRIPTRH 29
           P+LE P ST  ++ R PTR+
Sbjct: 532 PILEDPMSTLYDTSRYPTRN 551


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 114 INQFDENGDRCLRVLKAPRVNP 49
           ++ FD N D+ + V K P++NP
Sbjct: 222 LSDFDSNYDKLVFVAKDPKLNP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,641
Number of Sequences: 5004
Number of extensions: 40901
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)