Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0314
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22460.1 68414.m02807 expressed protein similar to axi 1 [Nic...    29   2.9  
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ...    28   3.8  
At1g51250.1 68414.m05764 expressed protein similar to hypothetic...    28   5.0  

>At1g22460.1 68414.m02807 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 565

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = -3

Query: 266 DSQEVLPPVMNTSPNKS---NSSQNLPP-DR--NHDPARNSVDCV 150
           ++ E++PP ++TSP+ S   N +  +P  D+   H P RN V CV
Sbjct: 104 NNTELVPPHVSTSPSSSSKLNITSGIPDFDKLWKHPPNRNFVPCV 148


>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 565

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 11  RGSPANV-SCR-DSPGFTLGAFRTLKHRSPFSSNWLITTKSTTS*VTHRHSLPS 166
           RG PA+  SC   SPG T   F  +   SP + + L   +S  + V  R +LPS
Sbjct: 424 RGKPADSESCSLSSPGLTRDHFNPMYMSSPANESPLNEEESRNAVVAARRNLPS 477


>At1g51250.1 68414.m05764 expressed protein similar to hypothetical
           protein GB:AAD30637
          Length = 139

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 14  GSPANVSCRD-SPGFTLGAFRTLKHRSPF 97
           G   N++CR  SP  T   F TLK++ PF
Sbjct: 35  GIDLNIACRQFSPKRTPSMFHTLKYKDPF 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,929
Number of Sequences: 28952
Number of extensions: 231556
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)