Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0313
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4327| Best HMM Match : Phosphodiest (HMM E-Value=0)                 29   2.8  
SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)                 28   4.8  
SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)                28   4.8  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_4327| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 488

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 231 NVFMGVVLVYCESVSRALQIIFCFLFMEFFXPLTCL 124
           ++  G +L Y  SVSR + I+  F+ +     LTC+
Sbjct: 413 HLLKGSLLAYLHSVSRTVSIVIGFVILVLLCTLTCV 448


>SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)
          Length = 280

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 305 IVTCRHFNFNKTEHRHARPICQPSLL 382
           ++TC H +F++  HR   PIC P+LL
Sbjct: 189 LLTCGH-SFHRECHRKTCPICLPNLL 213


>SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)
          Length = 380

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 112 RYYVELGGRQANVYLAGRREHIYESEKILKNKACDKS 2
           RY +EL   + N YL  RRE +YE+ + +    C K+
Sbjct: 96  RYSIELCDEEMN-YLIKRREFVYETMREVLGDRCPKN 131


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 305 IVTCRHFNFNKTEHRHARPICQPSLL 382
           ++TC H +F++  HR   PIC P+LL
Sbjct: 517 LLTCGH-SFHRECHRKTCPICLPNLL 541


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 305 IVTCRHFNFNKTEHRHARPICQPSLL 382
           ++TC H +F++  HR   PIC P+LL
Sbjct: 637 LLTCGH-SFHRECHRKTCPICLPNLL 661


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 116  NELKHVN-GLKNSINKKQKIICNARETDSQ*TSTTPIKTLKPSP 244
            +E+KH N GL+   N  +K   +   +D+    TTP KT+ P P
Sbjct: 2218 SEIKHHNNGLQFRSNSPEKSDTSPDPSDAIKIPTTPHKTVSPCP 2261


>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1496

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106 YVELGGRQANVYLAGRREHI 47
           Y+ +GGR  N+++AGR E I
Sbjct: 750 YLNIGGRMINLFIAGRDEGI 769



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106 YVELGGRQANVYLAGRREHI 47
           Y+ +GGR  N+++AGR E I
Sbjct: 855 YLNIGGRMINLFIAGRDEGI 874



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106 YVELGGRQANVYLAGRREHI 47
           Y+ +GGR  N+++AGR E I
Sbjct: 897 YLNIGGRMINLFIAGRDEGI 916



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106  YVELGGRQANVYLAGRREHI 47
            Y+ +GGR  N+++AGR E I
Sbjct: 960  YLNIGGRMINLFIAGRDEGI 979



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106  YVELGGRQANVYLAGRREHI 47
            Y+ +GGR  N+++AGR E I
Sbjct: 981  YLNIGGRMINLFIAGRDEGI 1000



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106  YVELGGRQANVYLAGRREHI 47
            Y+ +GGR  N+++AGR E I
Sbjct: 1044 YLNIGGRMINLFIAGRDEGI 1063


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,555
Number of Sequences: 59808
Number of extensions: 298310
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)