Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0313
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    28   4.0  
At1g13020.1 68414.m01510 eukaryotic translation initiation facto...    27   6.9  

>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 104 IIAINELKHVNGLKNSINKKQKIIC 178
           I+AIN  KH+N + NS++    ++C
Sbjct: 424 IVAINSTKHLNNISNSLSFLGGVLC 448


>At1g13020.1 68414.m01510 eukaryotic translation initiation factor,
           putative (EIF4B5) eukaryotic initiation factor 4B
           (GI:6739522) {Arabidopsis thaliana}; EST gb|T22808 comes
           from this gene
          Length = 549

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 158 KKQKIICNARETDSQ*TST-TPIKTLKPSPF 247
           ++++++   R+ D++ + T T +KT KPSPF
Sbjct: 265 ERRRLVFEPRKADTEVSETPTAVKTSKPSPF 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,182,365
Number of Sequences: 28952
Number of extensions: 214763
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)