Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0312
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   6.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 518 LATKPNPLSDTPALTTRGPRHH*P 589
           L+  P  LS  PA+ T GP+   P
Sbjct: 236 LSPHPPHLSSHPAIVTPGPKQELP 259


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 518 LATKPNPLSDTPALTTRGPRHH*P 589
           L+  P  LS  PA+ T GP+   P
Sbjct: 128 LSPHPPHLSSHPAIVTPGPKQELP 151


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +2

Query: 68  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 196
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
 Frame = -1

Query: 344 CPGTTTSGRASVS---C*PPTCPGTGACIQSQTGHIC 243
           CP  T      ++   C P  C   G C+    G  C
Sbjct: 248 CPSGTLGYICEINVDDCRPGACHNNGTCLDKVGGFEC 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,698
Number of Sequences: 336
Number of extensions: 2834
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)