Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0311
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 196 2e-51
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 196 2e-51
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 27 1.3
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 5.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.8
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 9.0
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 9.0
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.0
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 25 9.0
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 196 bits (478), Expect = 2e-51
Identities = 93/130 (71%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK
Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K
Sbjct: 61 IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120
Query: 399 LGGKILGFFF 428
GGKILGFF+
Sbjct: 121 AGGKILGFFY 130
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 196 bits (478), Expect = 2e-51
Identities = 93/130 (71%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK
Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K
Sbjct: 61 IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120
Query: 399 LGGKILGFFF 428
GGKILGFF+
Sbjct: 121 AGGKILGFFY 130
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 389 KKTPWRKNFRLLFLSLLNTRQNVKKKKKNSRGGPVPNSPYS 511
K T + + LF SL + N+ S P PN+P+S
Sbjct: 37 KITSLQPGYHFLFFSLASPESNLNSDGYESLYSPKPNNPFS 77
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = -2
Query: 403 PRCFLLASSWSMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTT 224
P + S +S+ P + T R S+S + TPH F PV +
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNAS 197
Query: 223 ILPAL 209
LPAL
Sbjct: 198 PLPAL 202
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 333 FGYLVLTTSGGIMDHEEARRKHLGGKIL 416
FGY+V+TT+ + A K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 337 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 215
P ++ SR+ SI + K + PH+ ++P +T I+P
Sbjct: 30 PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 322 PHDSLVT*SLQQVVASWTMKKPE 390
P+ S +T SL Q + W +++PE
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPE 176
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 175 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 35
P +I N +L+ L R F R L + + + +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 434 LLNTRQNVKKKKKNSRGGPVPNSPYSES 517
L+NT + +K K++N +P P+S S
Sbjct: 150 LVNTIEKLKVKEENEAPPVIPAKPFSSS 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,799
Number of Sequences: 5004
Number of extensions: 37519
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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