Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0311
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 222 1e-58
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 210 4e-55
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 134 5e-32
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 1.7
10_08_0623 + 19339639-19341210 29 3.0
11_01_0526 - 4140853-4141017,4141416-4141619 28 3.9
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 9.0
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 222 bits (543), Expect = 1e-58
Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 399 LGGKILGFFF 428
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 210 bits (514), Expect = 4e-55
Identities = 99/126 (78%), Positives = 113/126 (89%), Gaps = 1/126 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 399 LGGKIL 416
+GGK L
Sbjct: 121 VGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 134 bits (323), Expect = 5e-32
Identities = 58/124 (46%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = +3
Query: 57 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 236
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 237 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 413
GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Query: 414 LGFF 425
LG+F
Sbjct: 125 LGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 198 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 299
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 320 PLTTVWLP-SPYNKWWHHGP*RSQKKTPWRKNFRLLFLSLLNTRQNVKKKKKNSRGGPVP 496
P T +LP SP NK+ HH P P + + N+R + + ++ GP P
Sbjct: 858 PCTLSFLPLSPSNKYAHHPPFPPPPPPPH------VLCTQNNSRTQISEYEQGRVEGPCP 911
Query: 497 NSPYSES 517
+S Y +S
Sbjct: 912 SSSYGQS 918
>10_08_0623 + 19339639-19341210
Length = 523
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 380 RSQKKTPWRKNFRLLFLSLLNTRQNVKKKKKNSRGGPVPNSPYSES 517
R QK R+ LF+ L+N R+ KK++ + G P + + S
Sbjct: 240 RLQKAHALRRRQTELFVPLINARREYKKRQGGANGEPKKETTFEHS 285
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 216 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 311
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 216 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 311
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,346
Number of Sequences: 37544
Number of extensions: 248509
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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