Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0311
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   234   3e-62
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    30   0.86 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    30   0.86 
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   6.1  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  234 bits (572), Expect = 3e-62
 Identities = 111/130 (85%), Positives = 122/130 (93%), Gaps = 1/130 (0%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 398
           IVVNLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120

Query: 399 LGGKILGFFF 428
           LGGKILGFFF
Sbjct: 121 LGGKILGFFF 130


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 508 IGRIGYRAPPRVFFFFFYILTC 443
           IG  G+ APP VF FFF++  C
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYC 369


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 508 IGRIGYRAPPRVFFFFFYILTC 443
           IG  G+ APP VF FFF++  C
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYC 367


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 54   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 227
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 228  VN 233
            +N
Sbjct: 886  LN 887


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 257 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 111
           ++V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 14  SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +2

Query: 326 TTVWL-PSPYNKWW 364
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 195 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 314
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,872,684
Number of Sequences: 27780
Number of extensions: 209335
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)