Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0311
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 222 1e-58
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 222 1e-58
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 222 1e-58
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 219 1e-57
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 211 2e-55
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 136 6e-33
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 136 1e-32
At3g20430.1 68416.m02587 expressed protein 29 1.4
At3g19270.1 68416.m02444 cytochrome P450 family protein similar ... 29 1.4
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 1.9
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 2.5
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 7.6
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 222 bits (542), Expect = 1e-58
Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 399 LGGKILGFFF 428
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 222 bits (542), Expect = 1e-58
Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 399 LGGKILGFFF 428
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 222 bits (542), Expect = 1e-58
Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 399 LGGKILGFFF 428
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 219 bits (534), Expect = 1e-57
Identities = 101/130 (77%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 399 LGGKILGFFF 428
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 211 bits (515), Expect = 2e-55
Identities = 97/130 (74%), Positives = 114/130 (87%), Gaps = 1/130 (0%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 398
IVV L GRLN CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K+
Sbjct: 67 IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126
Query: 399 LGGKILGFFF 428
+GGK+LGFF+
Sbjct: 127 VGGKVLGFFY 136
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 136 bits (330), Expect = 6e-33
Identities = 61/125 (48%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Frame = +3
Query: 57 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 236
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 237 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 413
GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124
Query: 414 LGFFF 428
LGFF+
Sbjct: 125 LGFFY 129
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 136 bits (328), Expect = 1e-32
Identities = 62/124 (50%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = +3
Query: 57 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 236
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 237 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 413
GR+N C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQV 124
Query: 414 LGFF 425
LGFF
Sbjct: 125 LGFF 128
>At3g20430.1 68416.m02587 expressed protein
Length = 265
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 434 LLNTRQNVKKKKKNSRGGPVPNSPYS 511
L T +N +KKKK R GPV + P S
Sbjct: 65 LQQTNKNKRKKKKKKRKGPVMDKPMS 90
>At3g19270.1 68416.m02444 cytochrome P450 family protein similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 468
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +2
Query: 419 LLFLSLLNTRQNVKKKKKNSRGGPVPNS 502
+L L LL R V KKKKNSRG P S
Sbjct: 11 ILILCLLLVRVIVSKKKKNSRGKLPPGS 38
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 120 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 227
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 141 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 305
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 132 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 299
S +I L ++ K IG F+I DH G + V+ LTG L + + S + + D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254
Query: 300 ER 305
E+
Sbjct: 255 EK 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,322
Number of Sequences: 28952
Number of extensions: 202020
Number of successful extensions: 400
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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