Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0310
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0441 + 3130906-3131424,3131847-3132269                           29   3.7  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   4.8  
11_01_0404 + 3071412-3071464,3073572-3074970                           28   6.4  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    27   8.5  

>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 234 YWLVFMVMHEHGCS-VYSRSCMMRC 163
           YWL+F  +H HG   V + SC ++C
Sbjct: 278 YWLMFYRLHAHGIHLVLNLSCALQC 302


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 426 VGGVFHNTDRSISFMQRVVALHDITVASL 340
           +GGVFHN D  +SF    +   D TVAS+
Sbjct: 737 MGGVFHNEDGVLSFFIGSLGNVDQTVASI 765


>11_01_0404 + 3071412-3071464,3073572-3074970
          Length = 483

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 178 LHDALLLVQHGKIDLHSHDHESH 110
           + D + L QHGKI  H H H  H
Sbjct: 108 ISDGVQLGQHGKIAHHHHHHRHH 130


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/91 (23%), Positives = 40/91 (43%)
 Frame = -3

Query: 474  LCRSSVLDDCVETIVFVGGVFHNTDRSISFMQRVVALHDITVASLVLALQVPSVRVFDFV 295
            LC  SV   C +TI++           +  +    +LH  +  +  +  + P ++ +   
Sbjct: 944  LCNVSVQLLC-DTIIYDRKYSSWISCKLQVIVATYSLHSPSGKTAAIGNEFPELKQYS-A 1001

Query: 294  FKCIFGMSIIIFMVRLVSMMYWLVFMVMHEH 202
            F  IFG S +I+++R V  +  L   +  EH
Sbjct: 1002 FSKIFGGSCLIWLLRSVQELVSLSHKIFEEH 1032


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,047
Number of Sequences: 37544
Number of extensions: 296001
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)