Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0310
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 31 0.53
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 30 1.6
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_34940| Best HMM Match : 7tm_1 (HMM E-Value=0.033) 29 2.8
SB_5550| Best HMM Match : BofA (HMM E-Value=3.3) 29 3.8
SB_17292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 28 6.6
SB_19802| Best HMM Match : fn3 (HMM E-Value=0) 27 8.7
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 292 EYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSADKHNGFNAV 450
+Y D +TG + TR G V Y ++ + S+ + E+SAD+ NG+ +
Sbjct: 1202 KYMHGDTYTGHWRDN--TRHGHGVMSYGAMSSSAASVYIGEWSADRKNGYGTM 1252
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +1
Query: 244 DQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSA 423
D +DY + + A YK + D + HE D D + ++ + A
Sbjct: 568 DNRASDDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEA 627
Query: 424 DKHNGFNAVVKHTAP 468
D + N H AP
Sbjct: 628 DNYKTNNDTTNHEAP 642
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 86 HPSLLLDTM*LMVMGMKVNLTMLYQ*QRIMQLRLYTLHPCSCITMNTSQYIMETSLTMKI 265
H L L M LM+ M + LTM+ ++ + T + +T +M T +TM +
Sbjct: 436 HFQLKLTMMLLMMTSMTMMLTMMTSMTMMLTMMTLTTMMLTMMTSMKIMLMMMTLMTMML 495
Query: 266 MM--LIPNMHLNTKSKTLTL 319
MM L+P M + T+ L
Sbjct: 496 MMMTLMPMMLMMMTLMTMML 515
>SB_34940| Best HMM Match : 7tm_1 (HMM E-Value=0.033)
Length = 220
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -3
Query: 276 MSIIIFMVRLVSMMYWLVFMVMHEHG 199
+++ +F+V ++S+ WL F+++HE G
Sbjct: 104 LAVTLFIVTVLSLAAWLPFIIVHEVG 129
>SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)
Length = 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 309 VFDFVFKCIFGMSIIIFMVRLVSMMYWLVF 220
VF VF +FG+ + ++ + +++WLVF
Sbjct: 122 VFGLVFGLVFGIDFGLVLLLVFGLVFWLVF 151
>SB_17292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 439 FNAVVKHTAPTKHAEPVQQYYH 504
FNAV+ P K A PVQ ++H
Sbjct: 4 FNAVIPTATPPKKAMPVQTFFH 25
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 364 KGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAP 468
KG Y H+ DG R +EY + G+ HT P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY-LPPAHTRP 1775
>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 241 GDQPHHEDYDAHPKYAFEYKIEDPHTGD 324
GD ++Y A+ A+ Y +EDP T D
Sbjct: 1049 GDHISDDEYRAYEDGAYTYPVEDPFTDD 1076
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/59 (22%), Positives = 24/59 (40%)
Frame = -2
Query: 307 LRFCIQMHIWDEHHNLHGEAGLHDVLARVHGDARARVQRV*SELHDALLLVQHGKIDLH 131
LR C Q + E H H +HD++ D R ++ ++ D + + +H
Sbjct: 342 LRKCAQEGLTTEAHRGHVRCKMHDIITCKMQDVRCKMSDARCQMQDVRCKMSDARCQMH 400
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 241 GDQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGS 399
G +P+ D + FE+K + L H R G+ ++ Y H ADGS
Sbjct: 542 GVEPNDSDDGLFKLHNFEFKQSNECLAHLG--HSARSGNNIRVYLPSHSADGS 592
>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1075
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Frame = +2
Query: 224 TSQYIMETSLTMK--IMMLIPNMHLNTKSKTLTLG------T*RANTRLATVMS*RATTL 379
++ +I+++S+ K + +L P+M N K + T R +T T T +
Sbjct: 349 SASFILQSSVIYKDSVALLAPSMRSNCKRVSSTTSGSFMVLASRTSTNAPTAPPQNVTAM 408
Query: 380 CMKLMDLSVLWNTPPTNTM 436
+ + V W PP T+
Sbjct: 409 ALSSTSIYVTWQPPPPGTL 427
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,580
Number of Sequences: 59808
Number of extensions: 346069
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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