Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0310
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    31   0.81 
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    29   1.9  
AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical ...    29   2.5  
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    27   10.0 
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    27   10.0 

>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = -3

Query: 417 VFHNTDRSISFMQRVV--ALHDITVASLVLALQVPSVRVFDFVFKCIFGMSIIIFMVRLV 244
           VF +    + F+  V+  AL  IT   +   L   S+     V+  I   S I    +  
Sbjct: 203 VFRSNGSIVKFLSLVLVSALTTITFVGINYLLNNQSLNFLGPVYASILNFSSI----QPN 258

Query: 243 SMMYWLVFMVMHEHGCSVYSRSCMMRCYWYNMVRLTFI 130
           S +YW  F+ + EH  S Y+ S ++  Y++  + +TF+
Sbjct: 259 SGLYWYFFVQIFEHFRSFYTMSFVV-LYFFMPIPITFL 295


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 162 YWYNMVRLTFIPMTMSHIV 106
           Y+Y MV++TFIP  ++HI+
Sbjct: 52  YFYKMVKITFIPSLLTHII 70


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 444 VETIVFVGGVFHNTDRSISFMQRVVALHDITVASLVLALQVPSVRVFDFVFKCIFGMSII 265
           +     VGG+FHN   ++ F ++ +A++D      VLAL       FD V KC+  +S  
Sbjct: 61  IHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL----CHEFD-VIKCVSCLSTC 110

Query: 264 IF 259
           IF
Sbjct: 111 IF 112


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 444 VETIVFVGGVFHNTDRSISFMQRVVALHDITVASLVLALQVPSVRVFDFVFKCIFGMSII 265
           +     VGG+FHN   ++ F ++ +A++D      VLAL       FD V KC+  +S  
Sbjct: 61  IHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL----CHEFD-VIKCVSCLSTC 110

Query: 264 IF 259
           IF
Sbjct: 111 IF 112


>AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical
           protein ZK185.4 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 372 VALHDITVASLVLALQVPSVRVFDFVF-KCIFGMSIIIFMVRLVSMMYWLVFMVMHEHGC 196
           ++ H   V S+   L  P++  F  ++ K  F  +  +F +    + Y  VFMV+  HGC
Sbjct: 187 ISYHVKIVISICYFLSAPAIATFYALYWKACFTWAYELFAL----VEYLDVFMVIFYHGC 242

Query: 195 SVY 187
            VY
Sbjct: 243 CVY 245


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = -3

Query: 330 LQVPSVRVFDFVFKCIFGMSIIIFMVRLVSMMYWLVFMVMHEHGCSVYSRSCMMRCYWYN 151
           +Q  S  ++ ++     G+S++IF+V   S   W V       G ++ +   +  C W+ 
Sbjct: 587 MQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRV-EETSRGGFTISNDFSVYNCLWFT 645

Query: 150 M 148
           +
Sbjct: 646 L 646


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = -3

Query: 330 LQVPSVRVFDFVFKCIFGMSIIIFMVRLVSMMYWLVFMVMHEHGCSVYSRSCMMRCYWYN 151
           +Q  S  ++ ++     G+S++IF+V   S   W V       G ++ +   +  C W+ 
Sbjct: 587 MQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRV-EETSRGGFTISNDFSVYNCLWFT 645

Query: 150 M 148
           +
Sbjct: 646 L 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,189
Number of Sequences: 27780
Number of extensions: 245325
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)