Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0310
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 458 CLTTALKPLCLSAEY 414
           CLT  ++P C+  EY
Sbjct: 44  CLTVGMRPECMVPEY 58


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 458 CLTTALKPLCLSAEY 414
           CLT  ++P C+  EY
Sbjct: 247 CLTVGMRPECVVPEY 261


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 184 SELHDALLLVQHGKIDLHSHDHES 113
           S+LH  +  + HG++++H     S
Sbjct: 79  SDLHALVEFIYHGEVNVHQRSLSS 102


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 262 DYDAHPKYAFEYKIEDPHTG 321
           DYD+ P+Y  + +    H G
Sbjct: 366 DYDSRPQYQIDKRSMGSHHG 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,262
Number of Sequences: 438
Number of extensions: 3034
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)