Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0310
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    29   2.3  
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ...    29   3.1  
At5g50160.1 68418.m06212 ferric reductase-like transmembrane com...    27   7.1  
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    27   7.1  
At1g23630.1 68414.m02978 expressed protein contains Pfam profile...    27   7.1  
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik...    27   9.4  

>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 274 HPKYAFEYKIEDPHTGDL-----KSQHETRDGDVVKGYY 375
           HP +  E+KI DP T ++     K   + R   V+KGYY
Sbjct: 520 HPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYY 558


>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 386

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 277 DEHHNLHGEAGLHDVLARVHGDARARVQRV 188
           D+ H  HG+A LH+ + RV G+A   V  V
Sbjct: 288 DKCHFAHGQAELHNSVGRVEGEAMNAVASV 317


>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
           component family protein contains Pfam profile PF01794:
           Ferric reductase like transmembrane component
          Length = 728

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 273 SIIIFMVRLVSMMYWLVFMVMHEHGCSVYSRSCMMRCY--WYNMV 145
           S I   + LVS   W  F ++       +S S MM+C   W N V
Sbjct: 343 SFIFLNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTNSV 387


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 337 VGSSGPQCEGLRFCIQMHIWDEHHNLHGEAGLHDVL 230
           +G S  + + +  C    + D  H +HGE   H+V+
Sbjct: 24  IGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVV 59


>At1g23630.1 68414.m02978 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220; expression
           supported by MPSS
          Length = 264

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 301 IEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAPTK 474
           +E+PH  + KS        V   YY L E     R+   +  KH  ++A  K    TK
Sbjct: 15  VEEPHEVESKSPASNSVWAVDPKYYDLAEVKKESRLWRAAEKKHPWYDAPAKVKVTTK 72


>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
            (TIR-NBS-LRR class), putative domain signature
            TIR-NBS-LRR exists, suggestive of a disease resistance
            protein., closest Col-0 homolog to RPP1-WsB
          Length = 1240

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 393  WIYPCCGILRRQTQWFQRSRQAHCSDKACRACSTVLPSLKTFLS 524
            W    CGIL+R+T+ F RS       ++ RA S  L S   FLS
Sbjct: 1177 WKIGECGILQRETRSFCRSSSPDLPPESSRAFSLSL-SHSPFLS 1219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,869,726
Number of Sequences: 28952
Number of extensions: 228064
Number of successful extensions: 583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)