Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0309
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   1.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.1  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 196 IMDE--IPNRRIVKNILLLILSLRVIMPIV*Y*QR*LNMP 83
           I DE  I  R+++KN  +LI+   V M IV Y Q    MP
Sbjct: 110 IFDESVIFERKVMKNFAILIIPTCVAMFIVPYFQDRREMP 149


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 396 VRGSVPPHGRAQRPTCRPAYLYP 328
           V G   P G+A+ P   P Y++P
Sbjct: 91  VNGEWVPGGKAEVPPSNPIYIHP 113


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 624 LYDDHDNHSAHNSGIGNITSRSHRDAS 544
           + +DH+N +  NSG G++    + + S
Sbjct: 154 MIEDHENDTTGNSGEGSLQENRYYNNS 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,396
Number of Sequences: 336
Number of extensions: 3213
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)