Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0309
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   3.3  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   7.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.7  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -1

Query: 636 RGGHLYDDHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENR 466
           R  H YDD+     ++S       R    +S  SR+ D+D         S  R+ +R
Sbjct: 166 RSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSR 222


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 545 QVVQGPSISTSTALPPVALRSDGEKIVIVYPSN 447
           Q+VQ  ++ + + LPPVA+ S      IV P++
Sbjct: 132 QIVQAVNLRSLSYLPPVAMDSGNYPYEIVTPTS 164


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 549 HLCGSGS*YFRYHCCGRSDCRGRR 620
           HLC +   Y  +HC   + C GRR
Sbjct: 199 HLCDNCVEYLDHHCIWLNTCIGRR 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,663
Number of Sequences: 5004
Number of extensions: 51564
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)