Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0309
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0324 - 2428035-2428514                                           34   0.091
09_02_0126 + 4582214-4582453,4582539-4584201,4584244-4584584,458...    33   0.21 
03_05_0214 + 22040356-22040886                                         30   2.0  
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654...    29   4.5  
04_04_1053 - 30431236-30431428,30431794-30431856,30433497-304336...    28   6.0  
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395...    28   6.0  
03_02_1007 + 13160772-13161311                                         28   7.9  

>11_01_0324 - 2428035-2428514
          Length = 159

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 546 KHLCGSGS*YFRYHCCGRSDCRGRRKDDR 632
           +H C  G  + RY CC RSD R R+ DDR
Sbjct: 78  RHRCTEGH-HLRYRCCFRSDGRWRKGDDR 105


>09_02_0126 +
           4582214-4582453,4582539-4584201,4584244-4584584,
           4584809-4584999,4585080-4585190,4585278-4585338,
           4585610-4585795
          Length = 930

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 597 AHNSGIGNITSRSHRDASGRSRSVDFDQHGST-AGGTSKRRRENRYSISE*REGRAQDSF 421
           A   G+GNIT+RS  D  G    +   QH  T A G+ + + +N   I+E ++G  ++  
Sbjct: 726 ASKKGLGNITARSPADCFGEEGYICQTQHTVTLAPGSDQLKGKNPTEIAEYKKGLHKEKL 785

Query: 420 ALVS 409
             V+
Sbjct: 786 ITVA 789


>03_05_0214 + 22040356-22040886
          Length = 176

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -1

Query: 516 QHGSTAG--GTSKRRRENRYSISE*REGRAQDSFALVS*GDAVRGSVPPHGRAQRPTCRP 343
           +HG T    GTS+R R  R+     R G    + A  S GD   G  PPH   +R   R 
Sbjct: 58  RHGGTGNDAGTSQRWRRRRWQQGTGRRGERVTTRAPPSAGDG-DGECPPHASRRRRARRR 116

Query: 342 AYLYPSHVDSSPQFD 298
               P       +FD
Sbjct: 117 LDREPESSLHQQRFD 131


>03_02_0985 -
           12961787-12961984,12963177-12963337,12965332-12965489,
           12966015-12966105,12966715-12966752,12966994-12967154,
           12967249-12968687,12968815-12969227,12969630-12970987,
           12971089-12971454,12971533-12971696,12971748-12971820,
           12972967-12973113
          Length = 1588

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 612 HDNHSAHNSGIGNITSRSHRDASGRS-RSVDFDQHGSTAGGTSKRRR 475
           H + S+H+ G G++T +S + +  ++ R +D D+H  T+  T K  R
Sbjct: 831 HKSRSSHSDG-GDLTEKSKKHSKSKNRRGIDRDEH-KTSKKTKKEDR 875


>04_04_1053 -
           30431236-30431428,30431794-30431856,30433497-30433615,
           30433696-30433797,30434588-30434677,30434851-30435141,
           30435218-30435373,30435466-30435699
          Length = 415

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 428 SCARPSRYSDIL*RFSRRRFEVPPAVEPCWSKSTDLERPEASLWERL 568
           SC  P+ Y   L    RRR+ +PP      SK    +  +   W+ L
Sbjct: 43  SCRAPASYRSALLLHRRRRYALPPVAATATSKPVLKDPKKYQEWDSL 89


>03_01_0526 +
           3956909-3957071,3957262-3957317,3957398-3957462,
           3957560-3958006,3958102-3958227,3958328-3958511,
           3958788-3958943
          Length = 398

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 536 QGPSISTSTALPPVALRSDGEKIVIVYPSNVRDERKIRSHSYPEEMQFEALYHHTAAPKD 357
           Q P+++T    PP A R         +  N +D  K  +   P   + EAL    AAP+ 
Sbjct: 136 QDPALATPPPPPPAASRPPFG--AARWAKNAKDAIKSSAEKRPGNAEKEALLSKNAAPRQ 193

Query: 356 LRVDL 342
           L+  L
Sbjct: 194 LKSTL 198


>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 600 SAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRE 472
           S+ +SG G    R   D  G S  VD D   +  GG + RRR+
Sbjct: 73  SSDSSGGGGGAGRWDDDDDGCSSCVDGDDGAAAGGGGAGRRRD 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,981
Number of Sequences: 37544
Number of extensions: 342676
Number of successful extensions: 988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)