Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0309
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     28   8.0  
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   8.0  

>SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -1

Query: 663 RYRDTR*P*RGGHLYDDHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSK 484
           RY D R    G  +Y D DN    N    +   RS+RD   RSR     +    +   S 
Sbjct: 172 RYSDLRHD--GDKIYRDRDNEGKRNRDASDGRDRSYRDRDRRSREEREPRPERESDRDSN 229

Query: 483 RRRENR 466
           R++  R
Sbjct: 230 RQKHQR 235


>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1436

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 558 HRDASGRSRSVDFDQHGSTAGGTSKRRRE---NRYSISE*REGRAQDSFALVS*GDAVRG 388
           H  A    +SV     G T+G   + R +    RY + E +E +A  S  L   G A   
Sbjct: 360 HHSARCLVKSVCRVPIGETSGRDPRERTDAYCKRYPVRE-QESQANPSSLLKPPGSAETH 418

Query: 387 SVPPHGRAQRP 355
             PP G+ +RP
Sbjct: 419 DPPPQGKTKRP 429


>SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 516 QHGSTAGGTSKRRRENRYSISE 451
           Q G + GG +K R+ N YSIS+
Sbjct: 56  QSGQSNGGVAKTRKHNHYSISQ 77


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 663 RYRDTR*P*RGGHLYDDHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSK 484
           R R +R P R         +H +H S      SRS R    RSRS    +H S +    K
Sbjct: 233 RRRRSRSPRRRRRSRSPSPHHRSHRS---RSRSRSPRRRHSRSRSPTHRRHRSRSHSPEK 289

Query: 483 R--RRENRYSISE*REGRAQD 427
           +  +++ +    E R+ RA+D
Sbjct: 290 KKHKKKEKKEKDEKRKSRAED 310


>SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 631 ATSGSSGVSISRFPPG 678
           A SGSSG++I  FPPG
Sbjct: 163 AVSGSSGIAIGGFPPG 178


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 583 YRKYYEPLPQRCFRSFKVRRFRPARLYRRWHFEATAR 473
           ++ Y  P+P  C+   K  +   AR    WH E  A+
Sbjct: 638 HQNYVGPMPDLCYYDLKGMKEEDARAVSLWHQEQVAQ 674


>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 917

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/65 (23%), Positives = 24/65 (36%)
 Frame = -2

Query: 551 MLQVVQGPSISTSTALPPVALRSDGEKIVIVYPSNVRDERKIRSHSYPEEMQFEALYHHT 372
           ++ + Q    +T    PP      G+   ++ P    DER       P    +   +HHT
Sbjct: 238 VVSISQDDIDNTDAYYPPRVHYDPGDHSRLLLPGEEPDERPAEGWRVPRRRFYHHSHHHT 297

Query: 371 AAPKD 357
             P D
Sbjct: 298 YYPPD 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,067
Number of Sequences: 59808
Number of extensions: 404519
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)