Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0309
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 33 0.14
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical ... 29 2.3
Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical pr... 29 4.1
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 28 5.4
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 28 5.4
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 28 5.4
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 28 5.4
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 28 5.4
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 28 5.4
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 621 YDDHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYS 460
+ + DN SA ++G G TS+SH A G +F Q +S++ + RY+
Sbjct: 1176 HQNFDNRSAAHNGDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPRYN 1229
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 621 YDDHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYS 460
+ + DN SA ++G G TS+SH A G +F Q +S++ + RY+
Sbjct: 986 HQNFDNRSAAHNGDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPRYN 1039
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 615 DHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGR 436
D DNH ++ G HR + + +D++ S G +S+ R E+ Y IS E R
Sbjct: 357 DQDNHFYNDKDSGKHHRHRHRSKNNKKHKKHYDRNES--GNSSECREEDDYEISNPSEKR 414
>Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical
protein F02H6.7 protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 364 GAAVWWYRASNCISSGYEC 420
GA V W R+ +CIS GY C
Sbjct: 174 GANVEWSRSRDCISGGYNC 192
>AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical
protein R02D3.7 protein.
Length = 479
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 471 NRYSISE*REGRAQDSFALVS*GDAVRGSVPPHGRAQRP 355
N Y I+E +E + S S GD+ ++PPH +A RP
Sbjct: 117 NEYDINETKESTQKPS---TSSGDSFEMNIPPHRQASRP 152
>Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical
protein E03H4.6 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 579 RYHCCGRSDCRGRRKDDRHVRVIWCLDIS 665
RY C ++ C+G+RK+ R R +C+ I+
Sbjct: 99 RYLCEKKNQCKGKRKNCRACRFDYCVKIA 127
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Frame = -1
Query: 642 P*RGGHLYDDHDNHSAHNSGIG-----NITSRSH------RDASGRSRSVDFDQHGSTAG 496
P GH++ NHS H++G G N SH D+ G S + HG + G
Sbjct: 342 PYSNGHIHKSEGNHS-HDNGHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSHG 400
Query: 495 GTSKRRRENRYSISE*REGRAQD 427
G + + + S+ G + D
Sbjct: 401 GNNDNHGHSHSAGSDNHHGHSHD 423
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Frame = -1
Query: 642 P*RGGHLYDDHDNHSAHNSGIG-----NITSRSH------RDASGRSRSVDFDQHGSTAG 496
P GH++ NHS H++G G N SH D+ G S + HG + G
Sbjct: 360 PYSNGHIHKSEGNHS-HDNGHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSHG 418
Query: 495 GTSKRRRENRYSISE*REGRAQD 427
G + + + S+ G + D
Sbjct: 419 GNNDNHGHSHSAGSDNHHGHSHD 441
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 387 SVPPHGRAQRPTCRPAYLYPSHVDSSPQFDYD-SEKVVTRRTNVFMTCNLSS 235
S+P A +PT + ++ SP +DY V+TR T + +LSS
Sbjct: 214 SIPEVAAASQPTENGVGFFKDYLGGSPNYDYGFIPHVITRLTFISFYVHLSS 265
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 564 RSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGRAQDSFALVS*GD 400
RSH + S + H S++ S+RRR YS R R D + +S D
Sbjct: 71 RSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNND 125
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 564 RSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGRAQDSFALVS*GD 400
RSH + S + H S++ S+RRR YS R R D + +S D
Sbjct: 99 RSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNND 153
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 564 RSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGRAQDSFALVS*GD 400
RSH + S + H S++ S+RRR YS R R D + +S D
Sbjct: 157 RSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNND 211
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 564 RSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGRAQDSFALVS*GD 400
RSH + S + H S++ S+RRR YS R R D + +S D
Sbjct: 158 RSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNND 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,356
Number of Sequences: 27780
Number of extensions: 296667
Number of successful extensions: 889
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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