Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0309
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 34 0.10
At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) ... 31 0.93
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 28 5.0
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 28 5.0
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 28 5.0
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 28 6.6
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF... 27 8.7
At1g14660.1 68414.m01742 sodium proton exchanger, putative (NHX8... 27 8.7
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 615 DHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRE 472
+H++ + N I ++++ SHR S RSRS D D H + S R R+
Sbjct: 440 EHESSGSLNDSISDLSTDSHRQPSRRSRSRDHD-HANVGSTPSYRSRK 486
>At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) /
CYPLXXXVI / P450-dependent fatty acid omega-hydroxylase
identical to Cytochrome P450 86A1 (CYPLXXXVI)
(P450-dependent fatty acid omega-hydroxylase)
(SP:P48422) [Arabidopsis thaliana]
Length = 513
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 533 GPSISTSTALPPVALRSDGEKIVIVYPSNVRDERKIRSHSYPEEMQFEALYH 378
G + T T + P ++ G V +P NV K R +YP+ + A +H
Sbjct: 64 GGTYQTCTMVIPFVAKAQGFYTVTCHPKNVEHILKTRFDNYPKGPMWRAAFH 115
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 615 DHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGR 436
D D HS + D GRSRS D +GS + + R ++ +S S R
Sbjct: 208 DGDRHSRDSEDRYGRDGNRDDDYRGRSRS--VDNYGSRGRSSEREREDDGHSSSRGSGAR 265
Query: 435 AQDS 424
A D+
Sbjct: 266 ADDN 269
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 615 DHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGR 436
D D HS + D GRSRS D +GS + + R ++ +S S R
Sbjct: 208 DGDRHSRDSEDRYGRDGNRDDDYRGRSRS--VDNYGSRGRSSEREREDDGHSSSRGSGAR 265
Query: 435 AQDS 424
A D+
Sbjct: 266 ADDN 269
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 615 DHDNHSAHNSGIGNITSRSHRDASGRSRSVDFDQHGSTAGGTSKRRRENRYSISE*REGR 436
D D HS + D GRSRS D +GS + + R ++ +S S R
Sbjct: 208 DGDRHSRDSEDRYGRDGNRDDDYRGRSRS--VDNYGSRGRSSEREREDDGHSSSRGSGAR 265
Query: 435 AQDS 424
A D+
Sbjct: 266 ADDN 269
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 561 SHRDASGRSRSVDFDQHGSTAGGTSKRRRENR 466
SHR+ S R R +F +HGS + + R+ R
Sbjct: 219 SHREFSHRDRDREFYRHGSGKRSSERSERQER 250
>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
identical to alpha-glucosidase I (GI:16506680,
GI:13398928) [Arabidopsis thaliana]
Length = 852
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 123 IMTLSDKINNNMFLTIRRFGISSMIFTRK*FTNVYLY 233
I LSD + N+ L R+FG + T + +N+Y++
Sbjct: 280 IYNLSDLVQQNLALQARKFGRLQLSDTSEDSSNIYIF 316
>At1g14660.1 68414.m01742 sodium proton exchanger, putative (NHX8)
similar to Na+ H+ antiporter GB:CAA69925 GI:1655702
from (Xenopus laevis); similar to putative Na+/H+
antiporter SOS1 [Arabidopsis thaliana]
gi|8515714|gb|AAF76139; Member of The Monovalent
Cation:Proton Antiporter (CPA1) Family, PMID:11500563
Length = 697
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 1 VFFYSYKTSPILNLSRQSLFT*WFFTVQAYSVNVVNT 111
+FF ++ + S QSL W+FT Q + + NT
Sbjct: 291 MFFAAFARTAFKGDSHQSLHHFWYFTTQEMAAYIANT 327
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,854
Number of Sequences: 28952
Number of extensions: 266637
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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