BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0308 (626 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 3.9 SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 9.0 SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0 >SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 396 Score = 26.2 bits (55), Expect = 3.9 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 471 FLAVASKCHPAVEPCWSKSTDL 536 FL ++S+ H PCWS T L Sbjct: 117 FLHLSSRYHSVSLPCWSSGTGL 138 >SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 979 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +3 Query: 387 SLELHLLRIRVRTNLALVPHVT 452 S+ LHLL+ R+R+N++ P T Sbjct: 853 SVPLHLLQSRLRSNMSWQPEAT 874 >SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 689 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +1 Query: 370 AVWWY-RASNCISSGYECERILRS 438 A++WY R SNC++ E E I +S Sbjct: 97 AIYWYARRSNCLTGINEAEYIWKS 120 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,491,507 Number of Sequences: 5004 Number of extensions: 49178 Number of successful extensions: 120 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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