Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0308
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248     31   0.57 
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    27   9.2  

>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
          Length = 496

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = -3

Query: 504 PPGGTSKRRRENRYSISE*REGRAQDSFALVS*GDAVRGSVPPHGRAQRPTCRPAYLYPS 325
           PP   +KRRR N  + +  R GR +   A  S   A     PP  + Q  T  PA     
Sbjct: 161 PPQEPAKRRRRNTAAAATARRGRGRPRGATAS--SAHSAPPPPQQQQQPTTSAPAITAQR 218

Query: 324 HVDSSPQFDYDSEK 283
           + D + + D  S K
Sbjct: 219 NDDVNQEDDNQSSK 232


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 485 SDGEKIVIVYPSNVRDERKIRSHSYPEEMQFEAL 384
           S GEK  +  P N + E  I +HS+ E +  E+L
Sbjct: 501 STGEKKTLNLPQNNKQEELIAAHSFVENLLKESL 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,896,030
Number of Sequences: 37544
Number of extensions: 320213
Number of successful extensions: 898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)