Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0308
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical ...    29   2.1  
L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 364 GAAVWWYRASNCISSGYEC 420
           GA V W R+ +CIS GY C
Sbjct: 174 GANVEWSRSRDCISGGYNC 192


>AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical
           protein R02D3.7 protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 471 NRYSISE*REGRAQDSFALVS*GDAVRGSVPPHGRAQRP 355
           N Y I+E +E   + S    S GD+   ++PPH +A RP
Sbjct: 117 NEYDINETKESTQKPS---TSSGDSFEMNIPPHRQASRP 152


>L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical
           protein C02D5.3a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 387 SVPPHGRAQRPTCRPAYLYPSHVDSSPQFDYD-SEKVVTRRTNVFMTCNLSS 235
           S+P    A +PT      +  ++  SP +DY     V+TR T +    +LSS
Sbjct: 214 SIPEVAAASQPTENGVGFFKDYLGGSPNYDYGFIPHVITRLTFISFYVHLSS 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,807
Number of Sequences: 27780
Number of extensions: 283814
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)