Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0308
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27440.1 68415.m03316 rac GTPase activating protein, putative...    28   4.4  
At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    27   7.7  
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    27   7.7  
At1g14660.1 68414.m01742 sodium proton exchanger, putative (NHX8...    27   7.7  

>At2g27440.1 68415.m03316 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 3 [Lotus
           japonicus] GI:3695063; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 368

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 375 VVVQSLELHLLRIRVRTNLALVPHVTRIYYNDFLAVASKCHPAV 506
           ++ +  E H + I   TN++ V HVT   ++ FL + S+  P V
Sbjct: 77  IMAEENERHAMDISRPTNISHVAHVTYDRFDGFLGLPSEFEPDV 120


>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 584 IGNITSRSHRDA--SGRXKVRRFRPARLYRRVALRSDGEKIVIVYPSNV 444
           +  IT+  HR     G+ +V RF P   Y  V   S GE+I+I   SN+
Sbjct: 222 MSEITAGLHRGIYHQGKLRVNRFNPYEAY--VGSESIGEEIIIYGRSNM 268


>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 123 IMTLSDKINNNMFLTIRRFGISSMIFTRK*FTNVYLY 233
           I  LSD +  N+ L  R+FG   +  T +  +N+Y++
Sbjct: 280 IYNLSDLVQQNLALQARKFGRLQLSDTSEDSSNIYIF 316


>At1g14660.1 68414.m01742 sodium proton exchanger, putative (NHX8)
           similar to  Na+ H+ antiporter GB:CAA69925 GI:1655702
           from (Xenopus laevis); similar to putative Na+/H+
           antiporter SOS1 [Arabidopsis thaliana]
           gi|8515714|gb|AAF76139; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 697

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   VFFYSYKTSPILNLSRQSLFT*WFFTVQAYSVNVVNT 111
           +FF ++  +     S QSL   W+FT Q  +  + NT
Sbjct: 291 MFFAAFARTAFKGDSHQSLHHFWYFTTQEMAAYIANT 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,940
Number of Sequences: 28952
Number of extensions: 251625
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)