Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0307
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 225 DQTEIKQTPR--VPKGSGFQTASLRPH 299
           D+ E+K T     P  + F+T+ LRPH
Sbjct: 142 DEIEVKVTGNDAPPPITSFETSGLRPH 168


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 402 AHGCPFRLHIRYHCLQRVLVA 340
           AHG  ++  I+YH    V+ A
Sbjct: 147 AHGFSYKCGIQYHICNTVISA 167


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 402 AHGCPFRLHIRYHCLQRVLVA 340
           AHG  ++  I+YH    V+ A
Sbjct: 143 AHGFSYKCGIQYHICNTVISA 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,309
Number of Sequences: 336
Number of extensions: 2462
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)