Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0307
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 36 0.007
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 30 0.33
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.58
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 28 1.3
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 28 1.3
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 1.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 3.1
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 4.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.1
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 5.4
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 5.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.4
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 35.5 bits (78), Expect = 0.007
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Frame = +1
Query: 7 QDVILIKNLLVSVQHRWERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLD 186
QD+ + + +++HR+E VS+ R L H E +D+ + N ++ E+Q++
Sbjct: 84 QDLEGFREFMENLEHRYEMTVSE----VRRLSH------EVNDLQTDRENLKHQFEDQIE 133
Query: 187 QLNSEAT------VNDPDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHLKDK---APK 339
+LNSE + + D++++ + + E ++ + S + A + + LKD K
Sbjct: 134 KLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETK 193
Query: 340 GDENPLKTMITDMKTKWTTVCSKAVDRQRK 429
D + TD + + K R RK
Sbjct: 194 NDVPEVSRPSTDTIGVSSALSKKKKKRNRK 223
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 70 SKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLDQLNSEA----TVNDPDKIKQR 237
+K E ++ L +G + KEF + + M+WLNE ++ +L E+ V P KIK++
Sbjct: 11 NKELEYSQQLTNG--KMKEFFFLVSETMDWLNEHMLEVSKLQLESDIYELVRTPTKIKEK 68
Query: 238 LNKHR 252
+ R
Sbjct: 69 YSTPR 73
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
S S+ T + SP + +S S S S SSS+ +S + SS+SSS
Sbjct: 145 SSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 191
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
S S+ S S T SPS S S SSS+ +S + SS+SSS
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLSTA 408
S S+ + S S + +S S S S SSS+ +S + P SS SSS S++
Sbjct: 171 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 224
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
S+S+ T S S + +S S + S SSS+ +S + SS+SSS
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 177
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
S S+++ + S + +SPS S + SS+ +S + SS+SSS
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSS 174
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
S + T S S + +S S S S SSS+ +S + SS+SSS
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 193
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 55 WERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLDQLNSEATVND 216
WER VS R L KEA D W ++++ + E LD L + +D
Sbjct: 542 WERFVSTRFIVHRELMCNDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASD 595
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.9 bits (59), Expect = 1.3
Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 2/156 (1%)
Frame = +1
Query: 4 KQDVILIKNLLVSVQHRWERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQL 183
KQ+V+++K + ++ R +S S++RT LD + E N+ E
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRT--LDSQLQTVNE------NITRISTSIE--- 319
Query: 184 DQLNSEATVNDPDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHLKD--KAPKGDENPL 357
L + A + ++Q K +E + L K+ D + + KD ++ D
Sbjct: 320 --LKNTALEEEHGDLQQIRGKAKELETLLRGKRKRLDEVLSVYEKRKDEHQSISKDFKSQ 377
Query: 358 KTMITDMKTKWTTVCSKAVDRQRKLEEALLYSGQFK 465
+ +I+ + T +T RKL EA FK
Sbjct: 378 EELISSLTTGLSTTEGHETGYSRKLHEARDTLNDFK 413
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 49 HRWERVVSKSAER-TRALDHGFKEAKEFSDMWN-NLMNWLNETEEQLDQLNSEATVNDPD 222
H + +S S ++ + + E K+ S WN N + ++++E + + +++++ND D
Sbjct: 150 HSLQNEISSSTDKLSPSQSDALFEQKQDSLFWNDNAVIVVSDSESDDNNVRTKSSLNDHD 209
Query: 223 KIKQRLNKHRE 255
K+ + ++ E
Sbjct: 210 KVNMKEKRNLE 220
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 175 EQLDQLNSEATVNDPDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHLK 324
E L+QLN+E +K+ + + + + L S QPA + KHLK
Sbjct: 432 ETLNQLNTEIEARQSEKLNEVQEETQRLSQLLISSQPA----LTEVKHLK 477
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLSTAL 405
S S+ +S S + +SP+ + S SSS+ + SS+SSS S+ L
Sbjct: 267 SSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
++S+ ++S S +SP+ S S SSS +S + SS SSS
Sbjct: 320 TLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSS 366
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 554 TVSRSPCTGASP-SRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLSTALEHT 396
T+S S + +SP S S S SSS+ +S S+SSSF T+ T
Sbjct: 289 TISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 563 SAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
S+++ S S T +S S S S SSS+ + SS+SSS
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 196 SEATVNDPDKIKQRLNKHREFQKALASKQPAYDLTMK 306
+E +DP QRL K +K + KQ A DL++K
Sbjct: 146 NERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLK 182
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 578 LCCSISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSSF 426
L ++SA + S + TG++ + S+ S SSA +S + E S+AS+ F
Sbjct: 358 LSSTVSATSGSATSATGSATTTSY----SSDSSASSSSSSSHESSAASNGF 404
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 566 ISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSS 429
+S+ T S S T ++ S S S SSS+ +S + + SS SSS
Sbjct: 129 VSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 166 ETEEQLDQLNSEATVNDPDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHLKD 327
ET+E L + S AT + P +RL+K +S P Y K +K+
Sbjct: 265 ETDESLSRTISYATTSLPSTPGKRLSKESLAMSEASSINPEYKRIKKRANLIKE 318
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 76 SAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLDQLN 195
SAE+ + DH E S++WN L NE + D N
Sbjct: 253 SAEKEKRSDHLKSIQSEVSNLWNKLQVSPNEQSQFGDSSN 292
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLSTALEHT 396
+I T+S+S +G+S S + SSS S SS S+S+ S + H+
Sbjct: 416 NIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHS 473
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 569 SISAITVSRSPCTGASPSRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLSTA 408
S S+ S S + +SPS S S S S+ +S + SS+SSS + S++
Sbjct: 149 SSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSS 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,043
Number of Sequences: 5004
Number of extensions: 42433
Number of successful extensions: 221
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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