Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0307
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    26   0.36 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 401 ALRLLTGNGNWKRRCCTR 454
           ALRL TGN +W   C TR
Sbjct: 57  ALRLDTGNFSWGSECTTR 74


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 211 NDPDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHL 321
           ++ D  K  + KHREF+ ++ +     D  +KT + L
Sbjct: 647 HNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKL 683


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 NSEATVNDPDKIKQRLNKHREFQK 264
           NSE ++     +K+ LN + EFQ+
Sbjct: 628 NSENSIMQRASMKENLNVYPEFQE 651


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 KQPAYDLTMKTGKHLKDKAPKGD 345
           K+P  D+TM+  K+ K++    D
Sbjct: 2   KEPMIDITMEISKNHKEQLISND 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,612
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)