Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0307
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 33 0.12
At1g18990.1 68414.m02362 expressed protein contains Pfam profile... 32 0.29
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 31 0.88
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 31 0.88
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 30 1.2
At5g35380.1 68418.m04205 protein kinase family protein contains ... 29 2.0
At2g34780.1 68415.m04270 expressed protein 29 2.0
At2g29060.1 68415.m03532 scarecrow transcription factor family p... 29 2.0
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 26 2.4
At2g42750.1 68415.m05294 DNAJ heat shock N-terminal domain-conta... 29 2.7
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 28 4.7
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ... 28 6.2
At5g03680.1 68418.m00327 trihelix DNA-binding protein, putative ... 28 6.2
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein... 28 6.2
At2g25330.1 68415.m03030 meprin and TRAF homology domain-contain... 28 6.2
At3g14680.1 68416.m01857 cytochrome P450, putative similar to GB... 27 8.2
At3g14660.1 68416.m01855 cytochrome P450, putative similar to GB... 27 8.2
At1g55720.1 68414.m06380 calcium exchanger, putative similar to ... 27 8.2
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 33.5 bits (73), Expect = 0.12
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
Frame = +1
Query: 55 WERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLDQLNSEATVNDPDKIKQ 234
W + + K T E K+ SD+ N+ + + +++ D K ++
Sbjct: 337 WSKQLDKKQALTELERQKLDEDKKKSDVMNSSLQLASLEQKKTDDRVLRLVDEHKRKKEE 396
Query: 235 RLNKHREFQKALASKQP-AYDLTMKTGKHLKDKAPKGDENPLKTMITDMKTKWTTVCSKA 411
LNK + +K L SKQ ++ GK K D+ +K + MK + CS+
Sbjct: 397 TLNKILQLEKELDSKQKLQMEIQELKGKLKVMKHEDEDDEGIKKKMKKMKEELEEKCSEL 456
Query: 412 VD 417
D
Sbjct: 457 QD 458
>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 524
Score = 32.3 bits (70), Expect = 0.29
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Frame = +1
Query: 130 SDMWNNLMNWLNETEEQ--LDQLNSEATVNDPDKIKQRLNKHREFQKALASKQPAYDLTM 303
SD N W + ++ +DQ E+ V D D I Q LN+ + ++ DL M
Sbjct: 266 SDSAQNSPRWSVRSMKKSFVDQNGLESEVLDGDSILQHLNR-----QVRLDRKSLMDLYM 320
Query: 304 KTGKHLKDKAPKGDENPLKTMITDMKTKWTTVCSKAVDRQRKLEEALLYSGQFKDAMSAL 483
+ + A N MIT ++ + V +A+ QR ++E Y + +M+ L
Sbjct: 321 ELDEERSASAVAA--NNAMAMITRLQAEKAAVQMEALQYQRMMDEQAEYDQEALQSMNGL 378
Query: 484 L 486
L
Sbjct: 379 L 379
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 30.7 bits (66), Expect = 0.88
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = +1
Query: 1 QKQDVILIKNLLVSVQHRWERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQ 180
QK+D+ + + L SV E VSK+ + L + KE N + + +
Sbjct: 385 QKEDLEVSEQRLGSV----EEEVSKNEKEVEKLKSELETVKEEK---NRALKKEQDATSR 437
Query: 181 LDQLNSEAT--VNDPDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHLKDKAPKGDENP 354
+ +L+ E + ++D + K+ K ++ ++LAS A G+ LK+K ++
Sbjct: 438 VQRLSEEKSKLLSDLESSKEEEEKSKKAMESLAS---ALHEVSSEGRELKEKLLSQGDHE 494
Query: 355 LKTMITDMK 381
+T I D+K
Sbjct: 495 YETQIDDLK 503
>At4g30990.1 68417.m04398 expressed protein ; expression supported by
MPSS
Length = 2138
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 521 PSRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLS 414
PS F CFLS S S ++ +L C E S F L+
Sbjct: 1134 PSSLFSCFLSMSKSRNLVNLLCREESLVPDIFSILT 1169
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 112 KEAKEFSDMWNNLMNWLNETE 174
KEAK+FS MWN ++N E +
Sbjct: 790 KEAKQFSQMWNTIINSFREED 810
>At5g35380.1 68418.m04205 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 731
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 112 KEAKEFSDMWNNLMNWLNETEEQLDQ--LNSEATVNDPDKIKQRLNKHREFQKALASKQP 285
KEA N L+ W E E +L++ L+ EA + ++ K+ K R +A + Q
Sbjct: 316 KEAISAKKAANELLKWKAEKEHKLEEVRLSKEAAMAMAEREKE---KSRAAMEAAVAAQK 372
Query: 286 AYDLTMKTGKHLK 324
DL + KH++
Sbjct: 373 LSDLEAEKRKHIE 385
>At2g34780.1 68415.m04270 expressed protein
Length = 1297
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/101 (19%), Positives = 42/101 (41%)
Frame = +1
Query: 4 KQDVILIKNLLVSVQHRWERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQL 183
K+++ L+KNLL S + + E K+ + D E + + + + L L
Sbjct: 171 KREISLVKNLLASERQKTESERKKAESEKKKADKYLSELEVLRNSAHKTSSDLLTLTSNL 230
Query: 184 DQLNSEATVNDPDKIKQRLNKHREFQKALASKQPAYDLTMK 306
+ + + + +K++ E KA + A D++ K
Sbjct: 231 ETVKKQLELEKQKTLKEKKRADMESAKARDQMKLAEDVSKK 271
>At2g29060.1 68415.m03532 scarecrow transcription factor family
protein
Length = 1336
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 79 AERTRALDHGFKEAKEF---SDMWNNLMNWLNETEEQLDQLNSEATVNDPDKIKQRLNKH 249
AE G +EA +F SD W ++N E E+ D + E + D+++ + N
Sbjct: 830 AESALQFKKGVEEASKFLPNSDQW--VINLDIERSERRDSVKEEMGL---DQLRVKKNHE 884
Query: 250 REFQKALASKQ 282
R+F++ +SKQ
Sbjct: 885 RDFEEVRSSKQ 895
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 25.8 bits (54), Expect(2) = 2.4
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 10 DVILIKNLLVSVQHRWERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLD 186
DV +LL Q + +R K+ T L K+ D W LN++EE+ D
Sbjct: 701 DVTSGSSLLAKGQTKVKRTKKKTVAATSTLRSN-KKVSSLVDKWKAAKEELNDSEEEED 758
Score = 21.8 bits (44), Expect(2) = 2.4
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 175 EQLDQLNSEATVND-PDKIKQRLNKHREFQKALASKQPAYDLTMKTGKHLKDKAPKGDEN 351
E D N + D +K+K++ + + QK KQ DLT + + DE+
Sbjct: 783 EAKDNANFQPLGGDWREKVKRKRERAEKSQKKDPEKQQKPDLTKLSANLPSEWQAYWDES 842
Query: 352 PLKTMITDMKTKWTT 396
K + T T+
Sbjct: 843 TKKVYYGNTSTSQTS 857
>At2g42750.1 68415.m05294 DNAJ heat shock N-terminal
domain-containing protein low similarity to GFA2
[Arabidopsis thaliana] GI:21429604; contains Pfam
profile PF00226: DnaJ domain
Length = 344
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/82 (21%), Positives = 34/82 (41%)
Frame = +1
Query: 52 RWERVVSKSAERTRALDHGFKEAKEFSDMWNNLMNWLNETEEQLDQLNSEATVNDPDKIK 231
RWE+ +K + R+ K E W+NL NE ++ +++ A +
Sbjct: 259 RWEKRQAKVLNQARSRMMKRKNTDETPSYWDNLWGKQNEYQKSEEEVQERA-----QRAA 313
Query: 232 QRLNKHREFQKALASKQPAYDL 297
+ RE+ + K+P + L
Sbjct: 314 AAARRWREYSRRGVDKRPTFKL 335
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 533 TGASPSRSFCCFLSQSSSADMASLNCPE 450
T ASP+R FC +S+SS + +S PE
Sbjct: 383 TSASPARDFCINISESSRSLKSSWEKPE 410
>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
Length = 293
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 97 LDHGFKEAKEFSDMWNNLMNWLNETEEQLDQLNSEAT--VNDPDKIKQ 234
L H FS + W EE++D +N T + D K+K+
Sbjct: 184 LQHSINNEPRFSKEAKDFFQWRKSCEEEIDSVNKNKTWFIVDKTKLKE 231
>At5g03680.1 68418.m00327 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 591
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 52 RWERVVSKSAERTRA-LDHGFKEAKEFSDMWNNLMNWLNE 168
RW R + + R+ LDH FKEA + +W+ + ++E
Sbjct: 119 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMSE 158
>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
contains Pfam profile:PF01760 CONSTANS family zinc
finger
Length = 225
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 521 PSRSFCCFLSQSSSADMASLNCPEYSSASSSFRCLSTA 408
P R+ CC S SSS +SL+C S SS+ R ++ A
Sbjct: 66 PPRTTCCSESSSSSC-CSSLDCVSSSELSSTTRDVNRA 102
>At2g25330.1 68415.m03030 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein low similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 693
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 506 RSFWKETRLCTATW 547
+S WKE+ LCT TW
Sbjct: 601 KSVWKESSLCTKTW 614
>At3g14680.1 68416.m01857 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 512
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 205 TVNDPDKIKQRLNKHREFQKA 267
T+ DP++IK+ NK +FQKA
Sbjct: 107 TIMDPEQIKEVFNKVYDFQKA 127
>At3g14660.1 68416.m01855 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 512
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 205 TVNDPDKIKQRLNKHREFQKA 267
T+ DP++IK+ NK +FQKA
Sbjct: 107 TIMDPEQIKEVFNKVYDFQKA 127
>At1g55720.1 68414.m06380 calcium exchanger, putative similar to low
affinity calcium antiporter CAX2 [Arabidopsis thaliana]
gi|1488267|gb|AAB05914; H+/Ca2+ exchanger 2 [Ipomoea
nil] gi|4512263|dbj|BAA75232; Ca2+:Cation Antiporter
(CaCA) Family member PMID:11500563
Length = 401
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 345 VALGSLV-LEMLAGLHSEVVGWLFGSQSLLELAVF 244
VA+GS + + M A V+GW+ G+Q L L +F
Sbjct: 307 VAIGSSIQISMFAVPFCVVIGWMMGAQMDLNLQLF 341
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.129 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,767
Number of Sequences: 28952
Number of extensions: 246939
Number of successful extensions: 908
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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