Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0305
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 41 2e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 34 0.014
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.097
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.22
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 0.39
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 29 0.52
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.68
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 29 0.68
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.68
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.68
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.68
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 1.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.1
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 2.1
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 27 2.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.7
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 3.6
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 3.6
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.6
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 4.8
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 6.3
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 6.3
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 8.4
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.4
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.4
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/132 (23%), Positives = 58/132 (43%)
Frame = +1
Query: 160 TPDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDST 339
T S S + +S T PS S+ + +S S + S + S S S+ S S+
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 340 DDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSG 519
+++ S V T +S + + +++S S+ + SRP + + ++T S +
Sbjct: 195 SSSSSSSSSSSSSVPIT-SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTV 253
Query: 520 STTPVRSGQQTA 555
+ TP S T+
Sbjct: 254 TVTPSSSSSSTS 265
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 34.3 bits (75), Expect = 0.014
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
Frame = +1
Query: 160 TPDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDST 339
T SLS AAS T S ++ T T+ S + + A + S ++ SL+ST
Sbjct: 177 TSSSLSST-AASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNST 235
Query: 340 DDATTPSRIPMRKVTN----TKTSIARAAANASKLGVSTPNGSRPRTP--TGYLTPASGR 501
AT S V++ T ++ AA +AS S + P T TP S
Sbjct: 236 TSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSA 295
Query: 502 QRTP--SGSTTPVRSGQQTAVSRLLRKPSDASES 597
T S S+TP+ S T + P + S
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSVSS 329
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.097
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Frame = +1
Query: 160 TPDSLSDNEAASGLGTRYRKPS-VPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSL-- 330
T S S + ++ T PS + STL P TS P + + S P+ + S+LS
Sbjct: 282 TSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEV 341
Query: 331 ----------DSTDDATTPSRIPMRKVTNTKTS--IARAAANASK--LGVSTPNGSRPRT 468
D++ T + + T T TS I+ N S G S P+G +P
Sbjct: 342 EVEYFTKTITDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGSSFPDGFKPIN 401
Query: 469 PTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 561
PT + + S ++ PS +T P S T +
Sbjct: 402 PTSFPSLTSSTKKIPS-TTLPTSSKMITTTT 431
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 30.3 bits (65), Expect = 0.22
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Frame = +1
Query: 214 RKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTK 393
++P+ P + S +R S+ S P S ++ ++ + + P+ +T
Sbjct: 493 QEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGGKKSAIEAAAPIPTSADTV 552
Query: 394 TSIARAAANASKLGVSTPNGSR----PRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 561
S AA + S + +P + P + T TP S + +G+T P + TA +
Sbjct: 553 ES-KHAAGSGSATTIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTTKPAPAAGATATA 611
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 29.5 bits (63), Expect = 0.39
Identities = 30/98 (30%), Positives = 42/98 (42%)
Frame = +1
Query: 235 STLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAA 414
+ +TPG + S G+ +G SR SN S + + S R S A+A
Sbjct: 196 NVITPGVT---STTGAPSGKASLSRAASNSSTSARAGISVDSLFGKR-------SAAQAM 245
Query: 415 ANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTT 528
A VSTP G+ PR + LT S PS +T+
Sbjct: 246 ATVVP-SVSTPGGTPPRFASPALTVESMVHAAPSTTTS 282
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.52
Identities = 31/131 (23%), Positives = 48/131 (36%)
Frame = +1
Query: 163 PDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD 342
P + N +S + KP+ +T TP + GS G A + S + S ST
Sbjct: 136 PSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTS-NAPPASSTSTT 194
Query: 343 DATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGS 522
AT K + ++ + + + G S +P T + P S TPS S
Sbjct: 195 PATGSGGFSFGKPASLGSTNNASTSTTANSGFSF---GKPATTS---APGSNTTVTPSSS 248
Query: 523 TTPVRSGQQTA 555
T + A
Sbjct: 249 ITGTNDSKPAA 259
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.7 bits (61), Expect = 0.68
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +1
Query: 166 DSLSDNEAASGLGTRYRKPSVPRSTLTPGTS--RPGSRAGSRAGSKPPSRHGSNLSLDST 339
++ + +EA S + P V S +T TS + S + S+ ++ + S+LSL +
Sbjct: 474 ENYTSSEAFSTSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNA 533
Query: 340 DDA-TTPSR-IPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTP 513
+ +TPS IP +N+ S+ +S L +S+P S T T TPA TP
Sbjct: 534 KSSLSTPSTTIP---TSNSSVSLQ----TSSSLIISSPIISSSLTATSTSTPALTHSITP 586
Query: 514 SGST 525
S ++
Sbjct: 587 SNTS 590
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 0.68
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Frame = +1
Query: 211 YRKPSVPRSTLTPGTSR-PG-SRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVT 384
Y+KP+ +T+ SR P S+ S KP G LSL A ++ +
Sbjct: 82 YQKPT--GNTVDEDKSRVPDFSKKKSFVPPKPAIPKGKVLSLGGNTSAPKSTKPISISLG 139
Query: 385 NTKT-SIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 561
TK + + AA A++ TP T T A Q TP+ S + +A +
Sbjct: 140 GTKAPTTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPA 199
Query: 562 RLLRKPSDASE 594
L+K ++A+E
Sbjct: 200 AALKKAAEAAE 210
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.68
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Frame = +1
Query: 187 AASGLGTRYRKPSVPRST-LTPGTSRP--GSRAGSRAGSKPPSRHGSNLSLDSTDDATTP 357
+ S GT P + ST T TS P G+ + PP+ + L+ T + TT
Sbjct: 375 STSSTGTS-SSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLT---TTNCTTS 430
Query: 358 SRIPMRK--VTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTP 531
+ +P VT+T + + S STP S P T T T S + ++TP
Sbjct: 431 TSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Query: 532 V 534
+
Sbjct: 491 L 491
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 28.7 bits (61), Expect = 0.68
Identities = 25/113 (22%), Positives = 43/113 (38%)
Frame = +1
Query: 223 SVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSI 402
S ++ + T+ P S A +K P ++ + ++ + + R T + T
Sbjct: 198 SQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLP 257
Query: 403 ARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 561
LG +TP P T + L ASG + G T V + T+ S
Sbjct: 258 WSPRVFGPTLGYNTPPFGYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFS 310
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 28.7 bits (61), Expect = 0.68
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Frame = +1
Query: 214 RKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTK 393
R+P + T P TSR + S G P +N S S + A T T +
Sbjct: 179 RRPGLSSYTPGPSTSRRSISSSSNLGGN-PGLIANNPSA-SKNFAFTSGSSSTNNSTTSS 236
Query: 394 TSIARAAANASKLGVSTPNGSRPRTPTG-YLTPASGRQRTPSGST 525
+S+A + SK + P S + G LTP+ +GST
Sbjct: 237 SSMANGLQSISKHSAAFPLLSNATSFFGENLTPSLAASTASTGST 281
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 208 RYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRI 366
R K ++L+P + GS S+ S++ SNL+ S DD + S++
Sbjct: 297 RETKKKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASVDDVSEESQV 349
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +1
Query: 307 RHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLT 486
+H +++ +D D + PS K S+ R N S+ S P+ PR PT
Sbjct: 543 KHENSVEIDKKADDSLPSN---NKTEGYTPSVVREEKNYSEPNAS-PSVIPPRVPT---- 594
Query: 487 PASGRQRTPSGSTTP 531
P GR +P + P
Sbjct: 595 PVPGRTLSPKPTRIP 609
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 478 YLTPASGRQRTPSGSTTPVRS 540
Y P + QRTPSGS TP+ S
Sbjct: 346 YNPPRAPLQRTPSGSLTPLSS 366
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 445 PNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRL--LRKPSDASES 597
P RTP+G LTP S R P+ ++ P QT S + + +PS S+S
Sbjct: 349 PRAPLQRTPSGSLTPLSSR---PAHTSLPPIPTVQTTSSNVPPVNRPSLKSKS 398
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +1
Query: 304 SRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYL 483
S +G+N + +A+T +R + + +A ANA + ++ S P TP G
Sbjct: 196 SANGNNTGTSTPVNASTDTR--KSTASTPQLQQTQAQANAPQQRINPETSSVPETPVGVS 253
Query: 484 TPASGRQRTPSGSTTPVRSGQQTAVSR 564
+ T ++ +SG V +
Sbjct: 254 AANVSNESTELATSATQQSGLANNVEK 280
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 448 NGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSD 585
NGS P + + +PAS PS + S LLR+P++
Sbjct: 293 NGSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPAN 338
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 2.7
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 217 KPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDAT-TPSRIPMRKVTNTK 393
KPS P STLT G++ S +P S+ + DDAT ++ +R + +T+
Sbjct: 47 KPSTPLSTLTNGSTIQQSMTNQ---PEPTSQVPPISAKPPMDDATYATQQLTLRALLSTR 103
Query: 394 TS---IARAAANASKLGVST 444
+ I +A N ++L +T
Sbjct: 104 EAGIIIGKAGKNVAELRSTT 123
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 54 NRTHHEGEGKNSS--IGAYVRWSGSGRSRFQIFVECRNTRLAQ**RSGERTWNKIQEAQR 227
N+ G+ KN +G Y + + + Q +EC N R+ + ++ E + I E+Q
Sbjct: 183 NKVQTLGKAKNKKHWLGVYQSFGKASVDQIQKQLECYNVRMMELNKTDENNESAICESQA 242
Query: 228 SEVHFDTGNISTRFS 272
S + + +T S
Sbjct: 243 SSKEDERSDKTTSSS 257
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +1
Query: 481 LTPASGRQ--RTPSGSTTPVRS 540
+T SGRQ RTP GSTTP S
Sbjct: 138 MTTRSGRQSPRTPIGSTTPKSS 159
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 310 HGSNLSLDSTDDATTPSRIPMRKVTNTKTSIA 405
H +L + + + +PS+IP+RK K +++
Sbjct: 340 HNDHLKIPQSPSSLSPSKIPIRKKRKLKDTVS 371
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 223 SVPRSTLTPGT--SRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPS 360
S P ST PG+ S P + S PPS G+N++ +S ++A T S
Sbjct: 69 SSPPST-APGSAGSTPKTTPVSLNAGVPPSNTGANITTNSNNNAQTIS 115
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 350 VASSVLSKDKFDPCLEGGFDPALDPARE-PGRDVP 249
V SV S +KF CL+ G+D + +E P + +P
Sbjct: 188 VVGSVGSDEKFKICLDSGYDSVFNYKKESPFKALP 222
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = -1
Query: 543 SRPHRRRAARWGPLSSTSRRQVTGRRPRTGAVRRANPKLACIGGSTRDRSLRIRDF 376
S+P RRR R P + + +G R +L C +R + ++ DF
Sbjct: 61 SKPKRRRGERIPPSKRIRKAIAYVNKYASGCFGRVERRLVCTRSISRHSNQKLLDF 116
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 6.3
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 334 STDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTP 513
+TD A+ P + K +T + AN G S + TG+ + GR++
Sbjct: 55 NTDVASEPDVAMLHKKPSTVDTHDHPLANPPP-GCPMHKASNENS-TGFFSNLFGREKQN 112
Query: 514 SGSTTPVRSGQQTAVSRLLRKPSDASE 594
S +T V+ +S +KP+ SE
Sbjct: 113 SEATPAVQPPATCPMSNSNQKPAGVSE 139
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Frame = +1
Query: 259 RPGSRAGSRAGSK---------PPSRHGSNLSLDSTD 342
+PG+ SR GSK PPS NLS S+D
Sbjct: 261 KPGNSLASRLGSKPKSFKRKHSPPSEENGNLSFHSSD 297
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 166 DSLSDNEAA-SGLGTRYRKPSVPR-STLTPGTSRPGSRAGSRAG 291
D N+A+ T + PS R S + P TS GSR SR+G
Sbjct: 313 DPSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSRVVSRSG 356
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.0 bits (52), Expect = 8.4
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +1
Query: 220 PSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRI-PMRKVTNTKT 396
PS+PRST P S S R P NL + ++ TT S + + K+
Sbjct: 40 PSIPRSTALPNLSNRLSPYSHRNYLPIPEADSRNLEVLNSISLTTGSVVNQINKLYQRSC 99
Query: 397 SIARAAANASKLGVSTPNGSRPRT 468
A + L + TP T
Sbjct: 100 DNANYLQDLRSLILQTPTAEANAT 123
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 334 STDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPN 450
+TD ATT + P+ T TS + A+ S V++ N
Sbjct: 27 TTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTN 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.306 0.121 0.334
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,148
Number of Sequences: 5004
Number of extensions: 51922
Number of successful extensions: 158
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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