Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0305
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.18 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
 Frame = +1

Query: 250 GTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKV-----TNTKTSIARAA 414
           G +   S +G+ A  +PP+   SN     ++  +TP+ +   K+      +   S+A  A
Sbjct: 257 GNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEAKIFPPTPGSFNFSMAALA 316

Query: 415 ANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPS 516
              + L V  P       P      + G    PS
Sbjct: 317 TEHTPLSVKFPGMGHGLQPPDLAGTSQGSAGLPS 350


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +1

Query: 406 RAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRL 567
           R +   SK+ V    G   R  +GY   A G+QR      T  +S    A+  L
Sbjct: 266 RISNEMSKVKVIDMTGPEQRILSGYHAIAGGQQRPDENVVTDKKSKVNFALPEL 319


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 510 GPLSSTSRRQVTG 472
           GPLSST   QVTG
Sbjct: 393 GPLSSTGLAQVTG 405


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 427 KLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 561
           +L       S+P + T  +TP+  RQR    +  P+ + +  A S
Sbjct: 79  ELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPS 123


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 VQEHQTRSVITKRRADLEQDTGSP 223
           VQ+HQ  +V  +  +D++   GSP
Sbjct: 255 VQQHQPVTVNRQLNSDVQPGHGSP 278


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 222 GLPVSCSKSARRFVITERV 166
           G+PVSC     R+   E+V
Sbjct: 57  GIPVSCISGRDRYECIEKV 75


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 222 GLPVSCSKSARRFVITERV 166
           G+PVSC     R+   E+V
Sbjct: 57  GIPVSCISGRDRYECIEKV 75


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 222 GLPVSCSKSARRFVITERV 166
           G+PVSC     R+   E+V
Sbjct: 57  GIPVSCISGRDRYECIEKV 75


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/35 (20%), Positives = 16/35 (45%)
 Frame = +1

Query: 205 TRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSR 309
           T+ ++P + + +  P +  PG +       + P R
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQR 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.121    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,124
Number of Sequences: 438
Number of extensions: 3813
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)