Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0305
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01280.1 68418.m00037 expressed protein 43 1e-04
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 40 0.001
At3g09000.1 68416.m01053 proline-rich family protein 37 0.012
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 36 0.016
At2g37960.1 68415.m04659 expressed protein 36 0.027
At3g24550.1 68416.m03083 protein kinase family protein contains ... 35 0.047
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 34 0.083
At3g28790.1 68416.m03593 expressed protein 33 0.11
At3g08670.1 68416.m01007 expressed protein 33 0.14
At2g40070.1 68415.m04923 expressed protein 31 0.44
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 31 0.58
At4g30450.1 68417.m04324 glycine-rich protein 31 0.58
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 0.58
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 31 0.58
At3g04730.1 68416.m00509 auxin-responsive protein / indoleacetic... 31 0.77
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 30 1.0
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 30 1.0
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s... 29 1.8
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 29 1.8
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei... 29 2.4
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 29 2.4
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 29 2.4
At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid t... 29 2.4
At2g22720.3 68415.m02692 expressed protein 29 2.4
At2g22720.2 68415.m02691 expressed protein 29 2.4
At2g22720.1 68415.m02693 expressed protein 29 2.4
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 29 2.4
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 3.1
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 29 3.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 3.1
At1g43970.1 68414.m05072 hypothetical protein 29 3.1
At5g65530.1 68418.m08245 protein kinase, putative contains prote... 28 4.1
At5g64910.1 68418.m08165 expressed protein ; expression support... 28 5.4
At3g53320.1 68416.m05883 expressed protein 28 5.4
At3g22520.1 68416.m02846 expressed protein 28 5.4
At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finge... 28 5.4
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge... 28 5.4
At2g37070.1 68415.m04549 expressed protein 28 5.4
At1g72230.1 68414.m08351 plastocyanin-like domain-containing pro... 28 5.4
At1g32810.1 68414.m04044 expressed protein 28 5.4
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 28 5.4
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 28 5.4
At3g46920.1 68416.m05092 protein kinase family protein similar t... 27 7.2
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 27 9.5
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 27 9.5
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 27 9.5
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 27 9.5
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 27 9.5
At3g28830.1 68416.m03597 expressed protein 27 9.5
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 27 9.5
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 27 9.5
At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase famil... 27 9.5
At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein sim... 27 9.5
At1g13250.1 68414.m01538 glycosyl transferase family 8 protein c... 27 9.5
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 43.2 bits (97), Expect = 1e-04
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Frame = +1
Query: 205 TRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVT 384
+ ++ S+ S+ G RP S + SR+ S+PP+ T + TP++ P +
Sbjct: 66 SEHQTTSLHSSSSVSGIRRPSSSSSSRSTSRPPT---------PTRKSKTPAKRPSTPTS 116
Query: 385 NTKTSIARAAANASKLGVSTPNGSRPR----TPTGYLTPASGRQRTPSGSTTPVRSGQQT 552
++ RA +S ST + SRP T T +T + R P+ ST +G T
Sbjct: 117 RATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTGSAT 176
Query: 553 AVSRLLRKPSDASES 597
+ +R +P A S
Sbjct: 177 S-TRSNNRPMSAPNS 190
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 40.3 bits (90), Expect = 0.001
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Frame = +1
Query: 175 SDNEAASGLGTRYRKPSVPRSTLTP-----GTSRPGSRAGSRAGSKPPSRHGSNLSLDST 339
S N +++G G S P S+ TP +S P GS A S PS G S T
Sbjct: 42 SSNPSSTGFGFGSSVSSTPASSTTPSFGFGASSTPSFGFGSSASSSTPS-FGFGSSASVT 100
Query: 340 DDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRP---RTPTGYLTPASGRQRT 510
+TTPS T+ + +A S G ST N S +P G++T ++ T
Sbjct: 101 PASTTPS-------FGFGTAASSSAPAPSLFGSSTTNASSAAPGSSPFGFVTSSASSTAT 153
Query: 511 PSGS 522
PS S
Sbjct: 154 PSSS 157
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 36.7 bits (81), Expect = 0.012
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Frame = +1
Query: 217 KPSVPRSTLTPGTSRPGSRAGSRAGSKP--PSRHGSNLSLDSTDDATTPSRIPMRKVTNT 390
KP S++ G RP S SR+ S+P P+R ST T+ SR + +N+
Sbjct: 133 KPQTSSSSVA-GLRRPSSSGSSRSTSRPATPTRR-------STTPTTSTSRPVTTRASNS 184
Query: 391 KTS--IARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST-TPVRSGQQTAVS 561
++S +RA A++ ST + PRT T + S R TP+ S P + + VS
Sbjct: 185 RSSTPTSRATLTAARATTST---AAPRTTT--TSSGSARSATPTRSNPRPSSASSKKPVS 239
Query: 562 R 564
R
Sbjct: 240 R 240
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 36.3 bits (80), Expect = 0.016
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 268 SRAGSRAGSKPPSRHGSNLSLDSTDDATT--PSRIPMRKVTNT--KTSIARAAANASKLG 435
S+ S ++ P R S+ S T +T PS IP + ++ KT+ + A+AS
Sbjct: 91 SKLQSITTTRVPLRSESDPSSRPTRSGSTIRPSNIPTIRSSSVPKKTTTTQIQASAS--- 147
Query: 436 VSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 597
VS+P RT + LTP+S ++TPS ++TP R T+ + + DA S
Sbjct: 148 VSSPK----RTVSRSLTPSS--RKTPSPTSTPSRISTTTSTTPSFKTAGDAQRS 195
>At2g37960.1 68415.m04659 expressed protein
Length = 480
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +1
Query: 223 SVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSI 402
S+ + +P S G+ + SR G K + + L+ + + TP + TN + +
Sbjct: 183 SITKKRKSPEVS-VGAPSVSRKGMKKIPQAANYLTFQTPSEMQTPLNNGV--ATNESSDL 239
Query: 403 ARAAANA--SKLGVSTPNGSR-PRTPTGYLTPASGRQRTPSGST 525
+ A K G S P+ S PRTP ++P S ++ TP+ T
Sbjct: 240 TSSVAKCLFDKSGTSPPSNSTCPRTPQQKVSPQSDKEVTPTNCT 283
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 34.7 bits (76), Expect = 0.047
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Frame = +1
Query: 220 PSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD---DATTPSRIPMRKVTNT 390
PS P T+ P A S + PS + S +ST + P +P +
Sbjct: 13 PSPPSPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGS 72
Query: 391 KTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLL 570
T + ++ + S P+ + P P +P G TPSGST R+ T S
Sbjct: 73 LTPPLPQPSPSAPITPSPPSPTTPSNPRSPPSPNQGPPNTPSGSTP--RTPSNTKPS--- 127
Query: 571 RKPSDASE 594
PSD+S+
Sbjct: 128 -PPSDSSD 134
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 33.9 bits (74), Expect = 0.083
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 160 TPDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDST 339
TP S+ + G P+ P ++P TS P GS S PS S +
Sbjct: 610 TPSSVVSPSTSLPAGQLGAPPATPSMVVSPSTSPPAGHLGS--PSDTPSSLVSPSTSPPA 667
Query: 340 DDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSG 519
+PS P VT + + +A+ S + P+ S +P+ +P+ +PS
Sbjct: 668 GHLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSA--SPSVSPSASPSA 725
Query: 520 S 522
S
Sbjct: 726 S 726
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 33.5 bits (73), Expect = 0.11
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +1
Query: 220 PSVPR-STLTPGTSRPGSRAGSRAGSKPPSRHGS-NLSLDSTDDATTPSRIPMR-KVTNT 390
PS P ST TP T P + A S + S GS + S+ ++ + S V+ T
Sbjct: 293 PSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEKGSESASMKKESNSKSESESAASGSVSKT 352
Query: 391 KTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQ-RTPSGSTTPVRSGQQTAVS 561
K + ++ + K T +GS +P+G TP++ + S + +G + S
Sbjct: 353 KETNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASSKGSASASAGASASAS 410
Score = 28.3 bits (60), Expect = 4.1
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Frame = +1
Query: 235 STLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAA 414
+T + GTS S + S AGS + + + + + NT ++
Sbjct: 212 NTKSQGTSSK-SGSESTAGSIETNTGSKTEAGSKSSSSAKTKEVSGGSSGNTYKDTTGSS 270
Query: 415 ANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST-TPVRSGQQT-AVSRLLRKPSDA 588
+ AS G TP S P T TP++ TP+ ST TP T A + K S++
Sbjct: 271 SGASPSGSPTPTPSTPTPSTP--TPSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEKGSES 328
Query: 589 S 591
+
Sbjct: 329 A 329
Score = 27.9 bits (59), Expect = 5.4
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 14/156 (8%)
Frame = +1
Query: 169 SLSDNEAASGL---GTRYRKPSVPRS----TLTPGTSRPGSRAGSRAGSKPPSRHGS-NL 324
S SDNE++S GT + S + T T + GS++ S A +K S S N
Sbjct: 203 SSSDNESSSNTKSQGTSSKSGSESTAGSIETNTGSKTEAGSKSSSSAKTKEVSGGSSGNT 262
Query: 325 SLDSTDDAT------TPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLT 486
D+T ++ +P+ P +T T + + TP+ P TP T
Sbjct: 263 YKDTTGSSSGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTP-STPTPSTPAPSTPAAGKT 321
Query: 487 PASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASE 594
G + + +S ++A S + K + ++
Sbjct: 322 SEKGSESASMKKESNSKSESESAASGSVSKTKETNK 357
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 33.1 bits (72), Expect = 0.14
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +1
Query: 163 PDSLSDNEAASGL-GTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPP-SRHGSNLSLDS 336
P S S ++S T R S RS+ TP RPGS + S ++P S S +
Sbjct: 193 PSSPSSRSSSSARPSTPTRTSSASRSS-TPSRIRPGSSSSSMDKARPSLSSRPSTPTSRP 251
Query: 337 TDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPT-GYLTPASGRQRTP 513
A++P+ I R + T R+ ++ S S P S R + G P+ R +P
Sbjct: 252 QLSASSPNIIASRPNSRPSTPTRRSPSSTSLSATSGPTISGGRAASNGRTGPSLSRPSSP 311
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 31.5 bits (68), Expect = 0.44
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 15/139 (10%)
Frame = +1
Query: 214 RKPSVPRSTLTPGTSRP----GSRAGSRAGSKP--------PSRHGSNLSLDSTDDATTP 357
R S+ S LTP S+P AGS S P PSR + LS + +T
Sbjct: 240 RSTSLSSSRLTPTASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPT 299
Query: 358 SR---IPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTT 528
SR P + ++ + T R A+AS +T N + + PA TPS +
Sbjct: 300 SRPTLPPSKTISRSSTPTRRPIASAS-AATTTANPTISQIKPSSPAPAK-PMPTPSKNPA 357
Query: 529 PVRSGQQTAVSRLLRKPSD 585
R+ T SR KPSD
Sbjct: 358 LSRAASPTVRSRPW-KPSD 375
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 301 PSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGY 480
P+ S L+ ST+ A + + R+ T++ + + A+ P GSRP TPTG
Sbjct: 135 PATLTSRLANSSTESAAR-NHLTSRQQTSSPGLSSSSGASRRPSSSGGP-GSRPATPTGR 192
Query: 481 LTPASGRQRTPSGSTTPVRSGQQTA 555
+ + ++ ST R+ +A
Sbjct: 193 SSTLTANSKSSRPSTPTSRATVSSA 217
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 31.1 bits (67), Expect = 0.58
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 160 TPDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNL-SLDS 336
TP S+ + AAS R T TS P S A PP ++G+ L S S
Sbjct: 254 TPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSA-EMVPKTPPPKNGAGLHSAPS 312
Query: 337 TDDATTPS-RIPMRKVTNTKTSIA 405
T PS +P V+NT +++
Sbjct: 313 TPAGGRPSLNVPAGNVSNTSVTLS 336
>At4g30450.1 68417.m04324 glycine-rich protein
Length = 107
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1
Query: 187 AASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGS 318
A SG G+ R S S+ + +S G AGS AGS SR GS
Sbjct: 60 AGSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGS 103
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.1 bits (67), Expect = 0.58
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = +1
Query: 220 PSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDA-TTPSRIPMRKVTNTKT 396
P +T TPG S P S G PPS + S + TTPS P +
Sbjct: 468 PPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPS--PGGSPPSPSI 525
Query: 397 SIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST--TPVRSGQQT 552
S + S T GS P +P+ TP+S P+ ST TP+ GQ +
Sbjct: 526 SPSPPITVPSPPSTPTSPGS-PPSPSS-PTPSSPIPSPPTPSTPPTPISPGQNS 577
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 208 RYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD 342
+ ++P PR L G R G R GS+P RH + DS D
Sbjct: 250 KQQQPRSPRRVLHQGMGTRVGRDGRRGGSRPHKRHRFTRTDDSDD 294
>At3g04730.1 68416.m00509 auxin-responsive protein / indoleacetic
acid-induced protein 16 (IAA16) identical to SP|O24407
Auxin-responsive protein IAA16 (Indoleacetic
acid-induced protein 16) {Arabidopsis thaliana}
Length = 236
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 537 PHRRRAARWGPLSSTSRRQVTGRRPRTGAVRRANPKLACIGGSTRDRS 394
P + + W P+ S + ++G++P TG N K + G+T S
Sbjct: 66 PAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSAS 113
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 30.3 bits (65), Expect = 1.0
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +1
Query: 226 VPRSTLTPGTSR-PGSRAGSRAGSKP-PSRHGSNLSLDST--DDATTPSRIPMRKVTNTK 393
+P S+L+P + + P S A S P PS L + ++ + P VT T+
Sbjct: 5 IPSSSLSPKSLQSPNPMEPSPASSTPLPSSSSQQQQLMTAPISNSVNSAASPAMTVTTTE 64
Query: 394 TSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQ 549
+ + N S+ +S+PN + P G P+ PS S QQ
Sbjct: 65 GIVIQ---NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSLDQQTQTQQ 113
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 30.3 bits (65), Expect = 1.0
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +1
Query: 226 VPRSTLTPGTSR-PGSRAGSRAGSKP-PSRHGSNLSLDST--DDATTPSRIPMRKVTNTK 393
+P S+L+P + + P S A S P PS L + ++ + P VT T+
Sbjct: 5 IPSSSLSPKSLQSPNPMEPSPASSTPLPSSSSQQQQLMTAPISNSVNSAASPAMTVTTTE 64
Query: 394 TSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQ 549
+ + N S+ +S+PN + P G P+ PS S QQ
Sbjct: 65 GIVIQ---NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSLDQQTQTQQ 113
>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
subunit, putative similar to Toc64 [Pisum sativum]
GI:7453538; contains Pfam profile PF00515 TPR Domain
Length = 589
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 313 GSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGY 480
G N DS + P+RIP + ++A A + + LG+ T G R P GY
Sbjct: 122 GENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFA-LGIDTVGG--VRVPAGY 174
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 391 KTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTA 555
K ++ A +A TP S P TPT +P SG TP TTP T+
Sbjct: 119 KLAVNVVAGSAGPPATPTPPSSTPGTPTTPESPPSGGSPTP---TTPTPGAGSTS 170
>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
(LTI65) / desiccation-responsive protein 29B (RD29B)
nearly identical to SP|Q04980 Low-temperature-induced 65
kDa protein (Desiccation-responsive protein 29B)
{Arabidopsis thaliana}
Length = 619
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +1
Query: 292 SKPPSRHGSNLSLDSTDDATTPSRIP--MRKVTNTKTSIARAAAN--ASKLGVSTPN-GS 456
S+P R S + D + T PS + T+ T+ A AA N ASKLG + N G
Sbjct: 358 SRPKERDDSEETKDESTHETKPSTYTEQLASATSAITNKAIAAKNVVASKLGYTGENGGG 417
Query: 457 RPRTPTGYLTPAS 495
+ +P TP S
Sbjct: 418 QSESPVKDETPRS 430
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 337 TDDATTPSRIPMRKVTNTKTSIARAAANAS-KLGVSTPNGSR 459
T+ + SR+P+ K N K++I+R+ + +S +L +TP G R
Sbjct: 860 TEASNKKSRVPLPKA-NEKSTISRSVSTSSPELSSNTPGGGR 900
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 289 GSKPPSRHGSNLSLDSTDDATTPSRIP 369
GSK NL+ DSTD AT P++ P
Sbjct: 67 GSKGCPEQEGNLNKDSTDSATVPAKCP 93
>At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 183
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 172 LSDNEAASGLGTRYRKPS----VPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDST 339
L+ AA+G + PS P TLTP TS PG+R+G GSK G+ S +
Sbjct: 104 LTQCNAATGPTAQPPAPSPTEKTPDVTLTP-TSLPGARSGVGGGSKTVPSVGTGSSSRNV 162
Query: 340 D 342
D
Sbjct: 163 D 163
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 29.1 bits (62), Expect = 2.4
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +1
Query: 250 GTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD-DATTPSRIPMRKVTNTKTSIARAAANAS 426
G+ RPGS +A +PP GS ++ S + + SR R+ K + +S
Sbjct: 325 GSQRPGSSTNRQAPMRPPG-SGSTMNGQSANRNGQLNSRSDSRRSAPAKVPVDHRKQMSS 383
Query: 427 KLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST--TPVRSGQQTAVSR 564
GV R T L S +R PS S + ++S Q+ + SR
Sbjct: 384 SNGVGP---GRSATNARPLPSKSSLERKPSISAGKSSLQSPQRPSSSR 428
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 29.1 bits (62), Expect = 2.4
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +1
Query: 250 GTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD-DATTPSRIPMRKVTNTKTSIARAAANAS 426
G+ RPGS +A +PP GS ++ S + + SR R+ K + +S
Sbjct: 428 GSQRPGSSTNRQAPMRPPG-SGSTMNGQSANRNGQLNSRSDSRRSAPAKVPVDHRKQMSS 486
Query: 427 KLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST--TPVRSGQQTAVSR 564
GV R T L S +R PS S + ++S Q+ + SR
Sbjct: 487 SNGVGP---GRSATNARPLPSKSSLERKPSISAGKSSLQSPQRPSSSR 531
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 29.1 bits (62), Expect = 2.4
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +1
Query: 250 GTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD-DATTPSRIPMRKVTNTKTSIARAAANAS 426
G+ RPGS +A +PP GS ++ S + + SR R+ K + +S
Sbjct: 96 GSQRPGSSTNRQAPMRPPG-SGSTMNGQSANRNGQLNSRSDSRRSAPAKVPVDHRKQMSS 154
Query: 427 KLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST--TPVRSGQQTAVSR 564
GV R T L S +R PS S + ++S Q+ + SR
Sbjct: 155 SNGVGP---GRSATNARPLPSKSSLERKPSISAGKSSLQSPQRPSSSR 199
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/71 (30%), Positives = 28/71 (39%)
Frame = +1
Query: 352 TPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTP 531
TP R T +T I +AA + TP +RPRTP R RTP +
Sbjct: 190 TPERRSNTSDTRPRTPIHESAATGRR--PQTPE-TRPRTPDHRYATYDNRPRTPIHESAA 246
Query: 532 VRSGQQTAVSR 564
QT +R
Sbjct: 247 TERRPQTPETR 257
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 442 TPNGSRPRTPTGY--LTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 597
+P + R+P+ L+P+ R R+ S S +P+ +G+ +VSR K S+S
Sbjct: 765 SPPYRKRRSPSASHSLSPSRSRSRSKSYSKSPIGTGKARSVSRSPSKARSPSKS 818
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 346 ATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGST 525
A TPS P T T ++ AA + G P+ + P P LTP P+GST
Sbjct: 44 APTPSITPTP--TPTPSATPTAAPVSPPAGSPLPSSASPPAPPTSLTPDGAPVAGPTGST 101
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +1
Query: 256 SRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLG 435
SR SR+ SR+ S+ SR G S S + + S+ P + ++ + + + S+
Sbjct: 205 SRSPSRSRSRSRSRSRSR-GRGRS-HSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSP 262
Query: 436 VSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSG 543
S PR + + + R R+PS S VR G
Sbjct: 263 SPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPKVREG 298
>At1g43970.1 68414.m05072 hypothetical protein
Length = 239
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 178 DNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKP 300
+++++S + R R+ SVP ST PG S SR R P
Sbjct: 57 EDDSSSIVPVRNRQNSVPMSTEVPGVSSVTSRLAKRKRDTP 97
>At5g65530.1 68418.m08245 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 456
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 331 PRINLIHVS-KGVLILPSIQLENRVEMFPVSKWTSERWASCILFQVRSPLRYH*ASLVFL 155
PR +IH K IL S E ++ F ++KW E W I+F + Y A F+
Sbjct: 262 PR-RIIHRDIKASNILLSQDYEAQISDFGLAKWLPEHWPHHIVFPIEGTFGYL-APEYFM 319
Query: 154 HSTKIWKRD 128
H K D
Sbjct: 320 HGIVDEKTD 328
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 RPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRI-PMRKVTNTKTSIARAA 414
R GSR GSR G K + ++ + D+ +ATT P ++ T+ + A
Sbjct: 8 RGGSRGGSRGGRKTGASSSASKNDDAVVEATTTQETQPTQETEETEDKVESPA 60
>At3g53320.1 68416.m05883 expressed protein
Length = 553
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 226 VPRSTLTPGTSR-PGSRAGSRAGSKPPSRHGSNLSLDSTDDATT-PSRIPMRKVTNTKTS 399
VP ++ P R P + G G+ RHGS+ S T P+R P+++ TN+K+
Sbjct: 469 VPSASAKPSGLRVPSPKIGFFDGA----RHGSSSSASKKSGGKTQPARSPIQESTNSKSK 524
Query: 400 IARAAANAS 426
+ + S
Sbjct: 525 ASSKVVSVS 533
>At3g22520.1 68416.m02846 expressed protein
Length = 600
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 439 STPNGSRPRTPTGYLTPASGRQRTPSGSTTPV---RSGQQTAVSR 564
STP GS + G TPA+G P ST P +SG++T++ +
Sbjct: 258 STPRGSSNKKKKGATTPATG----PQSSTKPKPSRQSGRRTSIQQ 298
>At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 374
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 484 TPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASE 594
T + +Q TPSG T SG++ AVS + D +E
Sbjct: 252 TESGRKQLTPSGITNGENSGKKKAVSEQASEDMDCAE 288
>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 486
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 484 TPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASE 594
T + +Q TPSG T SG++ AVS + D +E
Sbjct: 252 TESGRKQLTPSGITNGENSGKKKAVSEQASEDMDCAE 288
>At2g37070.1 68415.m04549 expressed protein
Length = 420
Score = 27.9 bits (59), Expect = 5.4
Identities = 25/97 (25%), Positives = 39/97 (40%)
Frame = +1
Query: 262 PGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVS 441
P R + PS S L S+++ P+ P+RK ++ A A +
Sbjct: 44 PDKRKDLGSTEAVPSPTTSTLDDPSSEEKMKPN--PIRKRPGIRSQ-GLAKATKHPVASE 100
Query: 442 TPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQT 552
N S R TG P+SG +T S ++ Q+T
Sbjct: 101 EHNTSISRPSTGLNRPSSGLSKTKRASVDTNKAKQET 137
>At1g72230.1 68414.m08351 plastocyanin-like domain-containing
protein similar to blue copper protein SP:Q41001 from
[Pisum sativum]
Length = 181
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 400 IARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPV 534
I AA++ G T + + P G TP+ G++ +PS S T V
Sbjct: 116 IVPAASSGGSTGDGTTDKNTP-VQDGKTTPSEGKKASPSASATAV 159
>At1g32810.1 68414.m04044 expressed protein
Length = 654
Score = 27.9 bits (59), Expect = 5.4
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Frame = +1
Query: 208 RYRKP-SVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVT 384
R R+P S+P S P R S +GS+ + R + S + + R R
Sbjct: 325 RMRQPGSLPLSPTAPSFKRTSS-SGSKDHTTFSRRKNKDTSKEGYCNLRDDDRCSTRSAK 383
Query: 385 NTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSG 543
N ++ R ++ G S + T + +S + P STT SG
Sbjct: 384 NRRSPDRRTQQDSGSRGGSLCSKGEENETTKTSSYSSRKVLLPPNSTTSTSSG 436
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 161 VPALNEDLEARPAAPAPADIGTDR 90
+PA N+D++ + P PAD G+ R
Sbjct: 169 IPAGNDDVQGKTDCPPPADAGSKR 192
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 161 VPALNEDLEARPAAPAPADIGTDR 90
+PA N+D++ + P PAD G+ R
Sbjct: 169 IPAGNDDVQGKTDCPPPADAGSKR 192
>At3g46920.1 68416.m05092 protein kinase family protein similar to
MAP3K delta-1 protein kinase [Arabidopsis thaliana]
GI:2253010; contains Pfam profile: PF00069 Eukaryotic
protein kinase domain
Length = 1171
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 220 PSVPRSTLTPGTSRPGSRAGSRAGSK-PPSRH 312
P+ PR+T GT PG GS+ PPS H
Sbjct: 412 PTEPRNTAYQGTISPGIPFDGYGGSQVPPSNH 443
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 334 STDDATTPSRIPMRKVTNTKTSIARAAANASKL-GVSTPNGSRPRTPTGYLTPASGRQRT 510
S A PS P +++ + + ++S +TP+ P++P+ +P+ +
Sbjct: 254 SHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQSAA 313
Query: 511 PSGSTTPV 534
PS +TP+
Sbjct: 314 PSDQSTPL 321
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 256 SRPGSRAGSRAGSKPPSRHGSNLS-LDSTDDATTPSRIP 369
S P S G GS PP HG LS L S+ T P
Sbjct: 607 SPPSSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSP 645
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.1 bits (57), Expect = 9.5
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Frame = +1
Query: 196 GLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSN-----------LSLDSTD 342
G+G R+ S+P S+ + + S S G P++ N LS S D
Sbjct: 242 GMGPSLRRMSLPLSSSSRPLHKTSSNTSSYGGLVSPTKSEDNNIARTSGAQRLLSAGSLD 301
Query: 343 DATTPSRI----PMRKVTNTKTSIARA---AANASKLGVSTPNG---SRPRTPTGYLTPA 492
AT + + P+ + S +R ++++ G+ST G SR +P+ L+P
Sbjct: 302 RATLATAVARLHPLPAPGSRPASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPT 361
Query: 493 SGRQRTPSGSTTPVRSGQQTAVSRLLRKPS 582
G +PS +P R + +R PS
Sbjct: 362 RG--LSPSRGLSPSRGTNTSCFARPSTPPS 389
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.1 bits (57), Expect = 9.5
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Frame = +1
Query: 196 GLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSN-----------LSLDSTD 342
G+G R+ S+P S+ + + S S G P++ N LS S D
Sbjct: 242 GMGPSLRRMSLPLSSSSRPLHKTSSNTSSYGGLVSPTKSEDNNIARTSGAQRLLSAGSLD 301
Query: 343 DATTPSRI----PMRKVTNTKTSIARA---AANASKLGVSTPNG---SRPRTPTGYLTPA 492
AT + + P+ + S +R ++++ G+ST G SR +P+ L+P
Sbjct: 302 RATLATAVARLHPLPAPGSRPASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPT 361
Query: 493 SGRQRTPSGSTTPVRSGQQTAVSRLLRKPS 582
G +PS +P R + +R PS
Sbjct: 362 RG--LSPSRGLSPSRGTNTSCFARPSTPPS 389
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 516 RWGPLSSTSRRQVTGRRPRTGAVRRANPKLACIGGST 406
RW ++ S +++ PR G +++ LAC G T
Sbjct: 331 RWIQETAVSNQELNNNAPRQGLLKKHRNPLACAGCET 367
>At3g28830.1 68416.m03597 expressed protein
Length = 539
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/128 (17%), Positives = 48/128 (37%)
Frame = +1
Query: 172 LSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDAT 351
++D+ G + + S + G+ S+ S +GS + S A
Sbjct: 190 VNDSSIVGGAASSESSSTKSGSVSSSGSVSTKSKESSSSGSSASGSVATKSKESSGGSAA 249
Query: 352 TPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTP 531
T S+ TK+ + + + +P+GS +P+G ++ S + + S +
Sbjct: 250 TKSKESSGGSAATKSKESSGGSATTGKTSGSPSGSPKASPSGSVSGKSSSKGSASAQGSA 309
Query: 532 VRSGQQTA 555
G +A
Sbjct: 310 SAQGSASA 317
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 424 SKLGVSTPNGSRPRTPTGYLTPA--SGRQRTPSGSTTP 531
S+ G STP GS P +G+L P PS S TP
Sbjct: 225 SEPGPSTPTGSIPSPSSGFLPPIVYPPPMAPPSPSVTP 262
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 418 NASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPS 582
N +K S + R P G +T R PS S+T V + S+ KP+
Sbjct: 18 NLAKTRTSLRDVGNRRAPLGDITNQKNGSRNPSPSSTLVNCSNKIGQSKKAPKPA 72
>At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 390
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 SRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIAR-AAANASKL 432
S+ G + G KP S+ + S D DD+ + K TK +I R + A+
Sbjct: 321 SKKGQKPRGGRGKKPASKTKTEESDDDGDDSEAEEEVVKPKGRGTKPAIKRKSEEKATSQ 380
Query: 433 GVSTPNGSR 459
P G +
Sbjct: 381 AGKKPKGRK 389
>At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein
similar to GB:AAB65156 and GB:AAA96135
Length = 484
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = +1
Query: 358 SRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRP--RTPTGYLTPASGRQRTPS--GST 525
SR+ +R T+ ARA +GV PNG P TP + +PS GS
Sbjct: 110 SRVAIRWATDYLLKCARATPGKLYVGVGDPNGDHKCWERPEDMDTPRTVYSVSPSNPGSD 169
Query: 526 TPVRSGQQTAVSRLLRKPSDASES 597
+ A S ++ + D S
Sbjct: 170 VAAETAAALAASSMVFRKVDPKYS 193
>At1g13250.1 68414.m01538 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 Glycosyl transferase
family 8
Length = 345
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 225 RSEVHFDTGNISTRFSSWIEGRIKTPFETWIK 320
R +F+TG + W E R+ ETW++
Sbjct: 219 RKPCYFNTGVMVIDLGKWRERRVTVKLETWMR 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.306 0.121 0.334
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,900
Number of Sequences: 28952
Number of extensions: 293067
Number of successful extensions: 815
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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