Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0304
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  31   0.78 
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   2.4  
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_34940| Best HMM Match : 7tm_1 (HMM E-Value=0.033)                   29   4.2  
SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)                       29   5.5  
SB_17292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    28   9.6  

>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 292  EYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSADKHNGFNAV 450
            +Y   D +TG  +    TR G  V  Y ++  +  S+ + E+SAD+ NG+  +
Sbjct: 1202 KYMHGDTYTGHWRDN--TRHGHGVMSYGAMSSSAASVYIGEWSADRKNGYGTM 1252


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/75 (22%), Positives = 27/75 (36%)
 Frame = +1

Query: 244 DQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSA 423
           D    +DY  + + A  YK  +    D  + HE  D D      + ++        +  A
Sbjct: 568 DNRASDDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEA 627

Query: 424 DKHNGFNAVVKHTAP 468
           D +   N    H AP
Sbjct: 628 DNYKTNNDTTNHEAP 642


>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 715

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 86  HPSLLLDTM*LMVMGMKVNLTMLYQ*QRIMQLRLYTLHPCSCITMNTSQYIMETSLTMKI 265
           H  L L  M LM+  M + LTM+     ++ +   T    + +T      +M T +TM +
Sbjct: 436 HFQLKLTMMLLMMTSMTMMLTMMTSMTMMLTMMTLTTMMLTMMTSMKIMLMMMTLMTMML 495

Query: 266 MM--LIPNMHLNTKSKTLTL 319
           MM  L+P M +     T+ L
Sbjct: 496 MMMTLMPMMLMMMTLMTMML 515


>SB_34940| Best HMM Match : 7tm_1 (HMM E-Value=0.033)
          Length = 220

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -1

Query: 276 MSIIIFMVRLVSMMYWLVFMVMHEHG 199
           +++ +F+V ++S+  WL F+++HE G
Sbjct: 104 LAVTLFIVTVLSLAAWLPFIIVHEVG 129


>SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 309 VFDFVFKCIFGMSIIIFMVRLVSMMYWLVF 220
           VF  VF  +FG+   + ++ +  +++WLVF
Sbjct: 122 VFGLVFGLVFGIDFGLVLLLVFGLVFWLVF 151


>SB_17292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 439 FNAVVKHTAPTKHAEPVQQYYH 504
           FNAV+    P K A PVQ ++H
Sbjct: 4   FNAVIPTATPPKKAMPVQTFFH 25


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 364  KGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAP 468
            KG Y  H+ DG  R +EY +    G+     HT P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY-LPPAHTRP 1775


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 241  GDQPHHEDYDAHPKYAFEYKIEDPHTGD 324
            GD    ++Y A+   A+ Y +EDP T D
Sbjct: 1049 GDHISDDEYRAYEDGAYTYPVEDPFTDD 1076


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/59 (22%), Positives = 24/59 (40%)
 Frame = -3

Query: 307 LRFCIQMHIWDEHHNLHGEAGLHDVLARVHGDARARVQRV*SELHDALLLVQHGKIDLH 131
           LR C Q  +  E H  H    +HD++     D R ++     ++ D    +   +  +H
Sbjct: 342 LRKCAQEGLTTEAHRGHVRCKMHDIITCKMQDVRCKMSDARCQMQDVRCKMSDARCQMH 400


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 241 GDQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGS 399
           G +P+  D      + FE+K  +     L   H  R G+ ++ Y   H ADGS
Sbjct: 542 GVEPNDSDDGLFKLHNFEFKQSNECLAHLG--HSARSGNNIRVYLPSHSADGS 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,525,199
Number of Sequences: 59808
Number of extensions: 448125
Number of successful extensions: 1023
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)