Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0302
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    28   1.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.6  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             27   3.4  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   7.8  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 431 HFISFAINSGNDFMGSLNDFSISSEKYSFYYVYFM*KYPIYVLIR 565
           + I F  NS  ++M SL DF  S  +    Y ++   YPI  L R
Sbjct: 356 NIILFFQNSAREYMFSLTDFFYSDFELRVSYDFYGHDYPIKSLTR 400


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -2

Query: 57  KNQTRKIIICVVADGRT 7
           K+  +K+++C+++DGRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -2

Query: 507 FSLEILKSLSDPIKSLPEFIANDIKCKTGSC*WYAILDKAAAFFQSKENGENLTSVLFFM 328
           F L+ LK++S  I    + +  D+ C+     W+A ++K       + N ENL  +  + 
Sbjct: 117 FDLDRLKAISSKIGK--DRLVVDVSCRRKDNRWFAAINKWQVMTAFELNEENLDLLSQYC 174

Query: 327 FAFIL 313
             F++
Sbjct: 175 SEFLI 179


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 556 INSTVGYGHLQWLNFSTLVEIWKSMSE 636
           I+++V     +WL  + L E W+SMSE
Sbjct: 5   IDASVIVKEKEWLETNVLPEFWESMSE 31


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 380 NAAALSKMAYH*HDPVLHFISFAINSGNDFM 472
           N   + +  YH HD V  F +F I + N F+
Sbjct: 904 NDRFICESVYHLHDKVSKFQNFPITNTNSFL 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,939
Number of Sequences: 5004
Number of extensions: 57172
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)